Job Description P13016 Confidence 100.00% Date Thu Jan 5 11:33:25 GMT 2012 Rank 2 Aligned Residues 150 % Identity 35% Template c2bh7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	L	E	Q	G	W	L	V	G	A	R	R	V	P	S	P	H	Y	D	C	R	P	D	D	E	T	P	T	L	L	V	V	H	N	I	S	L	P	P	G	E	F	G	G	P	W	I	D	A	L	F	T	G	T	I	D	P	Q	A	H	P	F	F	A	E	I	A	H	L	R	V	S	A	H	C	L	I	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	E	K	E	G	Y	Q	L	D	T	R	R	Q	A	Q	A	A	Y	P	R	.	.	.	.	.	I	K	V	L	V	I	H	Y	T	A	D	D	F	D	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	T	L	T	D	K	Q	V	S	S	H	Y	L	V	P	A	V
Template Known Secondary structure						T	T						S	S			S					S	.	.	.	.	.										S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	T	T				S					S	S
Template Predicted Secondary structure																							.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
						79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.										.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	R	R	D	G	E	I	V	Q	Y	V	P	F	D	K	R	A	W	H	A	G	V	S	Q	Y	Q	G	R	E	R	C	N	D	F	S	I	G	I	E	L	E	G	T	D	T	L	.	.	.	.	.	.	.	.	.	A	Y	T	D	A	Q	Y	Q	Q	L	A	A	V	T	R	A	L	I	D	C	Y	P
Query Conservation		.	.	.	.																																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	R	Y	N	G	K	P	R	I	W	Q	L	V	P	E	Q	E	L	A	W	H	A	G	I	S	A	W	R	G	A	T	R	L	N	D	T	S	I	G	I	E	L	E	N	R	G	W	Q	K	S	A	G	V	K	Y	F	A	P	F	E	P	A	Q	I	Q	A	L	I	P	L	A	K	D	I	I	A	R	Y	H
Template Known Secondary structure						T	T								S		T	T	S			S		S		S				T	T				T	T	T	T															T	T																											T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	A	K	N	M	T	G	H	C	D	I	A	P	D	R	K	T	D	P	G	P	A	F	D	W	A	R	F	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	P	E	N	V	V	A	H	A	D	I	A	P	Q	R	K	D	D	P	G	P	L	F	P	W	Q	Q	L	A	Q
Template Known Secondary structure				G	G	G									T	T	T			T	T		T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions