Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | K | I | N | Y | P | L | L | A | L | A | I | G | A | F | G | I | G | T | T | E | F | S | P | M | G | L | L | P | V | I | A | R | G | V | D | V | S | I | P | A | A | G | M | L | I | S | A | Y | A | V | G | V | M | V | G | A | P | L | M |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
T | L | L | L | S | H | R | A | R | R | S | A | L | I | F | L | M | A | I | F | T | L | G | N | V | L | S | A | I | A | P | D | Y | M | T | L | M | L | S | R | I | L | T | S | L | N | H | G | A | F | F | G | L | G | S | V | V | A | A | S |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
V | V | P | K | H | K | Q | A | S | A | V | A | T | M | F | M | G | L | T | L | A | N | I | G | G | V | P | A | A | T | W | L | G | E | T | I | G | W | R | M | S | F | L | A | T | A | G | L | G | V | I | S | M | V | S | L | F | F | S | L |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
P | K | G | G | A | G | A | R | P | E | V | K | K | E | L | A | V | L | M | R | P | Q | V | L | S | A | L | L | T | T | V | L | G | A | G | A | M | F | T | L | Y | T | Y | I | S | P | V | L | Q | S | I | T | H | A | T | P | V | F | V | T |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
A | M | L | V | L | I | G | V | G | F | S | I | G | N | Y | L | G | G | K | L | A | D | R | S | V | N | G | T | L | K | G | F | L | L | L | L | M | V | I | M | L | A | I | P | F | L | A | R | N | E | F | G | A | A | I | S | M | V | V | W |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
G | A | A | T | F | A | V | V | P | P | L | Q | M | R | V | M | R | V | A | S | E | A | P | G | L | S | S | S | V | N | I | G | A | F | N | L | G | N | A | L | G | A | A | A | G | G | A | V | I | S | A | G | L | G | Y | S | F | V | P | V |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . |
Sequence |   |
M | G | A | I | V | A | G | L | A | L | L | L | V | F | M | S | A | R | K | Q | P | E | T | V | C | V | A | N | S |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 1pw4 chain A
Region: 2 - 388 Aligned: 386 Modelled: 387 Confidence: 100.0% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter
Phyre2
2 |
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PDB 2gfp chain A
Region: 7 - 368 Aligned: 362 Modelled: 362 Confidence: 100.0% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Phyre2
3 |
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PDB 3o7p chain A
Region: 2 - 379 Aligned: 373 Modelled: 378 Confidence: 100.0% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Phyre2
4 |
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PDB 1pv7 chain A
Region: 3 - 382 Aligned: 379 Modelled: 380 Confidence: 100.0% Identity: 10% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter
Phyre2
5 |
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PDB 2xut chain C
Region: 8 - 376 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 12% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
Phyre2
6 |
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PDB 2g9p chain A
Region: 59 - 72 Aligned: 14 Modelled: 14 Confidence: 12.9% Identity: 21% PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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