Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 67 Aligned Residues 315 % Identity 19% Template c3sqsA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12 Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.									.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																			.	.	.	.	.	.								.
Query SS confidence													.	.	.	.	.	.	.	.																			.	.	.	.	.	.								.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	.	.	.	.	.	.	.	.	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	.	.	.	.	.	.	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V
Query Conservation													.	.	.	.	.	.	.	.																			.	.	.	.	.	.								.
Alig confidence													.	.	.	.	.	.	.	.																			.	.	.	.	.	.								.													.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		M	T	K	I	K	S	V	R	T	R	V	W	N	W	T	G	P	T	V	P	P	Q	G	N	F	C	T	N	A	S	D	A	L	W	I	A	S	F	R	F	H	Q	W	L	T	C	E	V	E	T	E	D	G	T	I	G	I	G	N	A	A	L	A	.	.	.	.	.	.	P	N	V	V	K	Q	A	I	D	E	W
Template Known Secondary structure																	S						S	S		B				G	G	G	G	S								S										T	T	S									S	S	.	.	.	.	.	.											T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.															.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Query Sequence		V	P	Q	L	E	K	G	L	T	R	E	E	L	Q	K	I	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	.	V	V	I	G	T	P
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation
Template Sequence		Y	A	P	L	V	I	G	E	D	P	F	D	Y	A	Y	L	W	E	K	M	Y	R	R	T	H	A	W	G	R	K	G	I	G	M	T	A	I	S	A	I	D	I	A	I	W	D	L	M	G	K	L	V	G	K	P	V	F	K	L	L	G	G	R	T	K	E	K	I	P	V	Y	Y	S	K	L	Y	A	D	S	I
Template Known Secondary structure		T					T	T	S		G	G	G												T					S	S	T																						T		B						T				S	S	S										B
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.										.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																.
Query SS confidence																										.	.	.	.	.	.	.	.	.																.
Query Sequence		D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	D	N	.	.	.	.	.	.	.	.	.	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M
Query Conservation																										.	.	.	.	.	.	.	.	.																.
Alig confidence																										.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		P	A	M	Q	A	E	A	E	E	A	Q	K	H	G	Y	Q	G	Y	K	T	R	F	G	Y	G	P	K	D	G	P	A	G	M	R	E	N	L	K	R	V	E	A	L	R	E	V	L	G	Y	D	V	D	L	M	L	E	C	Y	M	G	W	N	L	D	Y	T	K	R	M	L	P	K	L	E	R	F	E	P	R	W
Template Known Secondary structure													T	T	T		S										G	G	G																					S	S	S							T	T		S													G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																			.	.																						.	.
Query SS confidence																			.	.																						.	.
Query Sequence		L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	.	.	H	P	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M
Query Conservation																			.	.																						.	.
Alig confidence																			.	.																						.	.
Template Conservation
Template Sequence		L	E	E	P	V	I	A	D	D	V	A	G	Y	A	E	L	N	A	M	G	I	V	P	I	S	G	G	E	H	E	F	S	V	M	G	C	A	E	L	I	N	R	K	A	V	S	V	L	Q	Y	D	T	N	R	V	G	G	I	T	A	A	Q	K	I	N	A	I	A	E	A	A	Q	I	I	V	I	P	H	A	G
Template Known Secondary structure						S		T	T											T		S	S						T	T			S										T	T			S										T																T						S	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																.	.	.												.
Query SS confidence																.	.	.												.
Query Sequence		L	C	T	S	R	A	I	S	A	A	L	P	L	V	.	.	.	P	Q	V	S	F	A	D	L	D	G	P	.	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation																.	.	.												.
Alig confidence																.	.	.												.
Template Conservation
Template Sequence		Q	M	H	N	Y	H	L	T	M	A	N	M	N	C	P	I	S	E	Y	F	P	V	F	D	V	E	V	G	N	E	L	F	Y	Y	I	F	D	G	D	P	E	A	V	D	G	Y	L	Q	L
Template Known Secondary structure		S									T		T	T									S			S	S	S	S	T	T	T												B	T	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions