Return to main results Retrieve Phyre Job Id

Job DescriptionP51981
Confidence100.00%DateThu Jan 5 12:04:52 GMT 2012
Rank89Aligned Residues319
% Identity15%Templatec3nxlD_
PDB info PDB header:lyaseChain: D: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.... .....40.........50.........60.........70.........
Predicted Secondary structure 








.














Query SS confidence 

































.












































Query Sequence  MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVEL. EEEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQ
Query Conservation 
  
       

  
          
   

 
.   
  
 

                 
                 
Alig confidence 

































.












































Template Conservation 

   
 
     
              
 

 






 
 

                 
 
 
    
     
  
Template Sequence  VTRXQVIPVAGRDSXLLNLCGAHAPYFTRNLVILDDSSGHTGVGEVPGGEGIRHALERXTDLVVGQSIGRYQATLNAVRA
Template Known Secondary structure 


BTT

STTS


TTSBGGG
Template Predicted Secondary structure 


































Template SS confidence 















































































   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   80.........90.........100.........110.. .......120...... ...
Predicted Secondary structure 








.







.............................


Query SS confidence 
































.













. . . . . . . . . . . . . . . . . . . . . . . . . . . . .


Query Sequence  KILPAGAARNALDCALWDLAARRQQQSLADLIG. ITLPETVITAQTVV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGT
Query Conservation         
  


 

 

 

  
 

  


.
             .............................   
Alig confidence 
































.













.............................


Template Conservation         
 









 

  
 

  




  
  

                                      
Template Sequence  ALSRLDNVITAIEAALLDLLGQHLDVPVAALLGEGQQRDAVPXLAYLFYIGDRGRTDLPYRDEAQARTPWFRLRNEEALT
Template Known Secondary structure 

TTSBGGGGSTT



SB


B

GGG

S




TT
SSTTS
B
S
Template Predicted Secondary structure 













































Template SS confidence 















































































   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   130.........140... ......150.. .......160.........170.........180.........190.........200.....
Predicted Secondary structure 
.



...


















Query SS confidence 













.








. . .




















































Query Sequence  PDQMANSASTLWQA. GAKLLKVKL. . . DNHLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPL
Query Conservation                .
    



...    
   
  

       
 



       
      
    
  



 
Alig confidence 













.








...











































.







Template Conservation                 

   
 
 
          
 



   
  
 



  
    

     

  .  





Template Sequence  PAAIARQAEAAVDRYGFADFKLKGGVXAGADEXEAIAAIKACFPDARATLDPNGAWSLDEAVALCRGQGHL. LAYAEDPC
Template Known Secondary structure 



SSS

TTS
TTBB
TT
TTT.
SS
B
Template Predicted Secondary structure 






















.



Template SS confidence 















































































   205....210.........220.........230.........240.........250.........260.........270..... ....280...
 
   206... 210....... ..220.........230........ .240.........250.........260.........270.......
Predicted Secondary structure 

......









..


















Query SS confidence 



. . . .







. .




















. .






































Query Sequence  PAQD. . . . DAALENFI. . HPLPICADESCHTRSNLKALK. . GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCML
Query Conservation      ....      
 ..  



 


           ..   
 
  
    


     
   
   

        
Alig confidence 



....







..




















..









.



























Template Conservation     
          
     



 

          

   
 

 
 
 .  



   


 

    
    
   
Template Sequence  GPEGGYSGREVXAEFRRATGIPTATNXIATDWRQXDHAVRLQAVDIPLADP. HFWTXQGSVRLAQLCRDWGLTWGSHSNN
Template Known Secondary structure 

BTTB



SSS

ST

SB

.
T


B



S
Template Predicted Secondary structure 






















.











Template SS confidence 















































































   284.....290.........300.........310.........320.........330.... .....340.........350.........360..
 
   278.280.........290..... ....300....... ..310.........320.
Predicted Secondary structure 





....




..







Query SS confidence 

















. . . .











. .













Query Sequence  CTSRAISAALPLVPQVSF. . . . ADLDGPTWLAVD. . VEPALQFTTGELHL
Query Conservation 

 
   
   
      .... 

        
..         
 
 
Alig confidence 

















....











..













Template Conservation     
  

  
  

 

                 
         
   
Template Sequence  HFDVSLAXFTHAAAAAPGTITAIDTHWIWQEGDARLTREPLKIVGGQVAV
Template Known Secondary structure 

T

S



B


BTTB
SBSS


TT
Template Predicted Secondary structure 























Template SS confidence 

















































   363......370.........380.........390.........400.........410..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions