Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 90 Aligned Residues 304 % Identity 18% Template c3n4fD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 Resolution 1.88 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.														.
Query SS confidence																							.	.														.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	.	.	G	S	R	S	E	A	R	V	V	V	V	E	L	.	E	E	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E
Query Conservation																							.	.														.
Alig confidence																							.	.														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	K	I	E	F	A	K	L	T	G	E	R	A	R	S	A	G	A	N	G	R	I	G	V	H	G	K	S	C	T	V	D	I	A	R	I	T	I	D	G	Q	T	G	Y	G	S	S	I	H	X	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	W	A	E	D	V	I	G	R	R	L	L	D
Template Known Secondary structure																				B		S	S	S																	T	T									S			.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	T		B	G	G	G
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.															.	.	.	.	70	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.											130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure								.	.																																				.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																																				.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	K	I	L	P	.	.	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	.	.	.	.	.	V	I	T	A	Q	T	V	V	I	G	T	.	.	.	.	.	.	.	.	.	.	P	D	Q	M	A	N	S	A	S	T	L
Query Conservation								.	.																																				.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																																				.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	D	D	R	G	R	L	R	E	A	Y	R	L	Q	L	E	Y	P	V	L	D	W	L	G	Q	R	Q	G	K	P	V	Y	D	L	V	S	G	A	H	L	E	T	G	A	S	L	V	V	P	C	Y	D	T	S	L	Y	F	D	D	L	H	L	A	D	E	R	A	A	V	A	L	X	Q	E	E	A	X	Q	G
Template Known Secondary structure		S	B		T	T	S		B		T	T	T																	T		B					T			T	T	S		T	T														B			T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		W	Q	A	G	A	K	L	L	K	V	K	L	D	.	.	.	.	.	.	.	.	.	.	.	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q
Query Conservation															.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		Y	A	K	G	Q	R	H	F	K	I	K	V	G	R	G	G	R	H	X	P	L	W	E	G	T	K	R	D	I	A	I	V	R	G	I	S	E	V	A	G	P	A	G	K	I	X	I	D	A	N	N	A	Y	N	L	N	L	T	K	E	V	L	A	A	L	S	D	V	N	L	Y	W	L	E	E	A	F	H	E	D
Template Known Secondary structure			T	T	T										T	T	T	T	T	S																						T	T								T	T														T	T	T	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		209			210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure			.	.										.	.	.	.																				.
Query SS confidence			.	.										.	.	.	.																				.
Query Sequence		D	.	.	D	A	A	L	E	N	F	I	H	.	.	.	.	P	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	.	K	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R
Query Conservation			.	.										.	.	.	.																				.
Alig confidence			.	.										.	.	.	.																				.														.																										.
Template Conservation																																																			.																										.
Template Sequence		E	A	L	Y	E	D	L	K	E	W	L	G	Q	R	G	Q	N	V	L	I	A	D	G	E	G	L	A	S	P	H	L	I	E	W	A	T	R	G	R	V	D	V	L	Q	Y	D	I	I	W	.	P	G	F	T	H	W	X	E	L	G	E	K	L	D	A	H	G	L	R	S	A	P	H	C	Y	.	G	N	A	Y
Template Known Secondary structure																T										S	S			T	T							T	T	S							B	T	T	T	.	B															T	T						B			.	S
Template Predicted Secondary structure																																																			.																										.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.
		282	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	I	S	A	A	L	P	L	V	.	.	.	P	Q	V	S	F	A	D	L	D	G	P	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation											.	.	.
Alig confidence											.	.	.																				.
Template Conservation																																	.
Template Sequence		G	I	Y	A	S	G	H	L	S	A	A	V	R	N	F	E	F	V	E	Y	D	D	I	T	I	E	G	X	D	V	S	.	G	Y	R	I	E	N	G	E	I	H	V
Template Known Secondary structure										T	T	T		T	T	B											T	T				T	.	T					T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions