Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 11 Aligned Residues 315 % Identity 34% Template c3ijlA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:muconate cycloisomerase; PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding. Resolution 1.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q	K	I	.
Query Conservation																																																																																	.
Alig confidence																																																																					.	.											.
Template Conservation																																																																					.	.
Template Sequence		K	M	T	F	F	P	Y	E	L	K	L	R	H	V	F	T	V	A	T	Y	S	R	T	T	T	P	D	V	Q	V	E	I	E	Y	E	G	V	T	G	Y	G	E	A	S	M	P	P	Y	L	G	E	T	V	E	S	V	M	N	F	L	K	K	V	N	L	E	Q	.	.	F	S	D	P	F	Q	L	E	D	I	L
Template Known Secondary structure																			T	T																T	T											G	G	G	S											T	T				T	T	.	.				T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.
									82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	P	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	D	N
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																												.
Template Conservation																																																																				.
Template Sequence		S	Y	V	D	S	L	S	P	K	D	T	A	A	K	A	A	V	D	I	A	L	H	D	L	V	G	K	L	L	G	A	P	W	Y	K	I	W	G	L	N	K	E	K	T	P	S	T	T	F	T	I	G	I	D	T	P	D	V	V	R	A	K	T	K	E	C	.	A	G	L	F	N	I	L	K	V	K	L	G	R
Template Known Secondary structure							T		S																						T	S	B					T	T			G	G	G			B	B			B																	.		T	T		S	S						S	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																														.																																				.	.
Query SS confidence																														.																																				.	.
Query Sequence		H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	D	A	T	L	I	V	D	A	N	E	S	W	R	.	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	.	.	H	P	L	P	I	C	A	D	E	S	C	H	T	R
Query Conservation																														.																																				.	.
Alig confidence															.															.																																				.	.
Template Conservation															.
Template Sequence		D	N	D	K	E	M	I	E	T	I	R	S	V	.	T	D	L	P	I	A	V	D	A	N	Q	G	W	K	D	R	Q	Y	A	L	D	M	I	H	W	L	K	E	K	G	I	V	M	I	E	Q	P	M	P	K	E	Q	L	D	D	I	A	W	V	T	Q	Q	S	P	L	P	V	F	A	D	E	S	L	Q	R	L
Template Known Secondary structure		S											T	T	.										T	T																		T	T								S		T	T											T		S	S					S	T	T			S	G
Template Predicted Secondary structure															.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	K	A	L	K	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q	V	S	F	A	D	L	D	G	P	T	W	L	A	V	D	V	E	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	V	A	A	L	K	G	A	F	T	G	I	N	I	K	L	M	K	C	T	G	M	R	E	A	W	K	M	V	T	L	A	H	A	L	G	M	R	V	M	V	G	C	M	T	E	T	S	C	A	I	S	A	A	S	Q	F	S	P	A	V	D	F	A	D	L	D	G	N	L	L	I	S	N	D	R	F	K	G
Template Known Secondary structure		G	G	T	G	G	G	B	T	T	B	S										T	S														T	T									S											T	T	G	G	G		S						G	G	G	G	B	S					B
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		312	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	F	T	T	G	E	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	V	V	N	G	K	I	T	L
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions