Phyre 2 alignment of P51981 with c3h12B

Job Description P51981
Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012

Rank 37 Aligned Residues 316

% Identity 23% Template c3h12B_

PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50

Resolution 1.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																.
Query SS confidence																						.	.																.
Query Sequence	M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	.	.	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E
Query Conservation																						.	.																.
Alig confidence																						.	.																.															.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence	I	T	E	V	K	A	H	A	L	S	T	P	I	P	E	R	M	R	V	E	S	G	A	G	L	K	L	N	R	Q	M	I	L	V	E	V	R	T	D	E	G	V	T	G	V	G	S	P	S	G	P	Y	D	.	.	.	.	L	A	V	L	K	R	A	I	E	D	V	I	G	P	Q	L	I	G	E	D	P	A	N
Template Known Secondary structure															G	G	G					T	T			B													T	T	S									S	S	S		.	.	.	.											T	T					T	T	S		T	T
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	78	.	80	.	.	.																	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.										.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.										.	.
Query Sequence	L	Q	K	I	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	.	V	I	T	A	Q	T	V	V	I	.	.	G	T	P	D	Q	M	A	N	S	A	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.										.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.										.	.
Template Conservation
Template Sequence	I	N	Y	L	W	H	K	V	F	H	G	E	V	S	R	N	L	G	H	R	S	V	G	I	A	A	M	S	G	V	D	I	A	L	W	D	L	K	G	R	A	M	N	Q	P	I	Y	Q	L	L	G	G	K	F	H	T	R	G	V	R	A	Y	A	S	S	I	Y	W	D	L	T	P	D	Q	A	A	D	E	L	A
Template Known Secondary structure												T							S	S	S																						T	S	B					T	T	S		S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	139	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure															.	.																		.
Query SS confidence															.	.																		.
Query Sequence	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	.	.	D	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N
Query Conservation															.	.																		.
Alig confidence															.	.																		.
Template Conservation
Template Sequence	G	W	V	E	Q	G	F	T	A	A	K	L	K	V	G	R	A	P	R	K	D	A	A	N	L	R	A	M	R	Q	R	V	G	A	D	V	E	I	L	V	D	A	N	Q	S	L	G	R	H	D	A	L	A	M	L	R	I	L	D	E	A	G	C	Y	W	F	E	E	P	L	S	I	D	D	I	E	G	H	R	I
Template Known Secondary structure						T		S							S	S																		S	S	S							T	T																	T	T		S				S		S		T	T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	216	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure					.	.	.																				.	.
Query SS confidence					.	.	.																				.	.
Query Sequence	F	I	H	P	.	.	.	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V
Query Conservation					.	.	.																				.	.
Alig confidence					.	.	.																				.	.																																							.
Template Conservation																																																																			.
Template Sequence	L	R	A	Q	G	T	P	V	R	I	A	T	G	E	N	L	Y	T	R	N	A	F	N	D	Y	I	R	N	D	A	I	D	V	L	Q	A	D	A	S	R	A	G	G	I	T	E	A	L	A	I	S	A	S	A	A	S	A	H	L	A	W	N	P	H	T	F	.	N	D	I	I	T	V	A	A	N	L	H	L	V
Template Known Secondary structure			T	T			S	S						T	T													T	T			S						T	T	T	S	S															T	T								T	.	T	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.

	291	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence	P	Q	V	S	F	A	.	.	.	.	.	D	L	D	G	P	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence	A	A	S	P	H	P	A	M	F	E	W	D	I	T	H	N	D	L	M	T	R	L	A	S	Y	D	L	K	L	E	N	G	L	V	Q	P
Template Known Secondary structure			S	S	S									S	S		G	G	G	T	T	S	B	S						B	T	T
Template Predicted Secondary structure
Template SS confidence
	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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