Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 46 Aligned Residues 305 % Identity 27% Template c3dfyJ_ PDB info PDB header:isomerase Chain: J: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q
Query Conservation																																						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	N	V	K	L	S	L	K	R	Y	E	Y	E	K	.	.	.	.	.	.	.	.	.	.	E	S	R	N	V	E	V	E	I	V	L	E	S	G	V	K	G	Y	G	E	A	S	P	S	F	R	V	N	G	E	R	V	E	A	L	L	A	I	E	N	A	V	R	E	M	I	T	G	I	D	V	R	N	Y	A
Template Known Secondary structure														B			.	.	.	.	.	.	.	.	.	.												T	T	S																								T									T	T			G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.											.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		K	I	L	.	.	.	.	.	.	.	P	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																	.
Template Conservation																																												.
Template Sequence		R	I	F	E	I	T	D	R	L	F	G	F	P	S	L	K	A	A	V	Q	F	A	T	L	D	A	L	S	Q	E	L	G	T	Q	V	C	Y	L	L	G	G	K	.	R	D	E	I	E	T	D	K	T	V	G	I	D	T	V	E	N	R	V	K	E	A	K	K	I	F	E	E	G	F	R	V	I	K	I	K	V
Template Known Secondary structure								T	T		T	T	S																			T	T	S						T	T			.		S				B						S																T	T
Template Predicted Secondary structure																																												.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.																																												.	.																							.	.
Query SS confidence		.	.																																												.	.																							.	.
Query Sequence		.	.	D	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	.	.	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	.	.	H	P	L	P	I	C	A	D	E
Query Conservation		.	.																																												.	.																							.	.
Alig confidence		.	.																																												.	.																							.	.
Template Conservation
Template Sequence		G	E	N	L	K	E	D	I	E	A	V	E	E	I	A	K	V	T	R	G	A	K	Y	I	V	D	A	N	M	G	Y	T	Q	K	E	A	V	E	F	A	R	A	V	Y	Q	K	G	I	D	I	A	V	Y	E	Q	P	V	R	R	E	D	I	E	G	L	K	F	V	R	F	H	S	P	F	P	V	A	A	D	E
Template Known Secondary structure			S															T	S	T	T								T	T		S															T	T				S						S		T	T													S	S					S	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		227	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure														.	.																																																					.	.	.
Query SS confidence														.	.																																																					.	.	.
Query Sequence		S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	.	.	.	P	Q	V	S	F	A	D	L	D	G	P
Query Conservation														.	.																																																					.	.	.
Alig confidence														.	.													.																																								.	.	.
Template Conservation																												.
Template Sequence		S	A	R	T	K	F	D	V	M	R	L	V	K	E	E	A	V	D	Y	V	N	I	K	L	M	K	.	S	G	I	S	D	A	L	A	I	V	E	I	A	E	S	S	G	L	K	L	M	I	G	C	M	G	E	S	S	L	G	I	N	Q	S	V	H	F	A	L	G	T	G	A	F	E	F	H	D	L	D	S	H
Template Known Secondary structure		T		S	S										T	T			S									.															T	T	T								S	S																				S
Template Predicted Secondary structure																												.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	L	K	E	E	V	F	R	G	K	F	I	Q	D	G
Template Known Secondary structure				B			S	S				S	S				T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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