Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 64 Aligned Residues 304 % Identity 16% Template c3dfhC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q
Query Conservation																																						.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Sequence		I	S	D	I	H	C	I	I	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	R	H	N	L	I	T	V	V	V	E	T	N	E	G	V	T	G	F	G	C	A	T	F	Q	Q	.	.	.	.	R	P	L	A	V	K	T	M	V	D	E	Y	L	K	P	I	L	I	G	K	N	A	N	N	I	E
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S										T	T											T	T	.	.	.	.												T						T	T		B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.														.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		80	.	.	.	.														.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	W	Q	M	M	M	V	N	A	Y	W	R	N	G	P	V	I	N	N	A	I	S	G	V	D	M	A	L	W	D	I	K	A	K	L	A	G	M	P	L	H	Q	L	F	G	G	K	S	R	D	A	I	P	V	Y	T	H	A	T	S	D	T	M	E	G	I	Y	D	L	V	E	G	F	L	E	K	G	Y	K
Template Known Secondary structure										T	T	S	S			S																						T	T	S	B						T			S	S	S											S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		147	.	.	150	.	.	.	.							.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.																.
Query SS confidence										.	.	.	.	.	.																.
Query Sequence		L	L	K	V	K	L	D	N	.	.	.	.	.	.	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	H	P
Query Conservation										.	.	.	.	.	.																.
Alig confidence										.	.	.	.	.	.																.
Template Conservation
Template Sequence		H	I	R	C	Q	L	G	F	D	Q	D	Q	Y	M	D	N	T	L	T	M	F	K	S	L	R	E	K	Y	G	N	Q	F	H	I	L	H	D	V	H	E	R	L	F	P	N	Q	A	I	Q	F	A	K	E	V	E	Q	Y	K	P	Y	F	I	E	D	I	L	P	P	N	Q	T	E	W	L	D	N	I	R	S	Q
Template Known Secondary structure																														T	T	S	S							T	T		S													G	G	G			S						S		T	T		G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290				.
Predicted Secondary structure		.	.																				.	.																																									.													.	.	.
Query SS confidence		.	.																				.	.																																									.													.	.	.
Query Sequence		.	.	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	.	T	S	R	A	I	S	A	A	L	P	L	V	.	.	.	P
Query Conservation		.	.																				.	.																																									.													.	.	.
Alig confidence		.	.																				.	.																																									.													.	.	.
Template Conservation
Template Sequence		S	S	V	S	L	G	L	G	E	L	F	N	N	P	E	E	W	K	S	L	I	A	N	R	R	I	D	F	I	R	C	H	V	S	Q	I	G	G	I	T	P	A	L	K	L	G	H	L	C	Q	N	F	G	V	R	I	A	W	H	C	P	P	D	M	T	P	I	G	A	A	V	N	T	H	L	N	V	H	L	H
Template Known Secondary structure										T	T			S										T	T			S						T	T	T	T	T	S															T									T	T																S	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		292	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	V	S	F	A	D	L	D	G	P	.	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		N	A	A	I	Q	E	H	V	E	Y	N	G	N	T	H	K	V	F	P	N	A	A	E	P	I	N	G	Y	L	Y	A
Template Known Secondary structure		T	B																S	T	T					B	T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions