Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 75 Aligned Residues 303 % Identity 23% Template c3ddmD_ PDB info PDB header:lyase Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50 Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q	K	I
Query Conservation																																				.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.													.																		.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		R	V	R	A	H	V	F	R	Y	P	V	.	.	.	.	.	.	.	.	.	.	.	H	D	R	P	A	V	L	V	E	V	E	D	S	D	G	A	V	G	W	G	E	V	W	C	N	F	P	A	C	G	.	A	E	H	R	A	R	L	V	E	T	V	L	A	P	L	L	T	A	R	A	F	A	D	P	A	Q	A
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.													T	T	S											S	S	T	T		.											T						T	T	S		B	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.																			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.												.	.
Template Conservation																																																					.												.	.
Template Sequence		F	A	H	L	E	A	R	T	A	V	L	A	I	Q	T	G	E	P	G	P	L	A	Q	A	I	A	G	L	D	I	A	L	C	D	L	A	A	R	R	A	G	Q	P	L	W	A	W	L	G	G	S	.	G	D	R	I	G	V	Y	A	S	G	I	.	.	N	P	E	N	P	E	D	V	V	A	R	K	A	A	E
Template Known Secondary structure								T	T								T																									T		B					T	T		S	.												.	.		S	S
Template Predicted Secondary structure																																																					.												.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.
Predicted Secondary structure											.	.																		.																																												.						.	.
Query SS confidence											.	.																		.																																												.						.	.
Query Sequence		G	A	K	L	L	K	V	K	L	.	.	D	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	.	L	E	N	F	I	.	.
Query Conservation											.	.																		.																																												.						.	.
Alig confidence											.	.																		.																																												.						.	.
Template Conservation
Template Sequence		G	Y	R	A	F	K	L	K	V	G	F	D	D	A	R	D	V	R	N	A	L	H	V	R	E	L	L	G	A	A	T	P	L	M	A	D	A	N	Q	G	W	D	L	P	R	A	R	Q	M	A	Q	R	L	G	P	A	Q	L	D	W	L	E	E	P	L	R	A	D	R	P	A	A	E	W	A	E	L	A	Q	A
Template Known Secondary structure		T									S	S																		S	S	S							T	T															G	G	G									S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		H	P	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q	V	S	F
Query Conservation																							.	.
Alig confidence																							.	.																																	.
Template Conservation																																																									.
Template Sequence		A	P	M	P	L	A	G	G	E	N	I	A	G	V	A	A	F	E	T	A	L	A	A	R	S	L	R	V	M	Q	P	D	L	A	K	W	G	G	F	S	G	C	L	P	V	A	R	A	V	V	A	A	G	L	R	.	Y	C	P	H	Y	L	G	A	G	I	G	L	Q	A	S	A	H	L	L	A	A	V	P	G
Template Known Secondary structure			S	S						T	T			S											T									T	T	T	T	T															T	T			.							S															S
Template Predicted Secondary structure																																																									.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		296									.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	.	.	D	L	D	G	P	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	S	P	G	L	L	G	V	D	A	N	D	N	P	L	R	S	L	L	S	P	A	L	A	T	L	H	E	G	R	I	T	L
Template Known Secondary structure		S	S	S									S							T	S		G	G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions