Job Description P51981 Confidence 97.38% Date Thu Jan 5 12:04:52 GMT 2012 Rank 159 Aligned Residues 133 % Identity 19% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	D	.	.	.	A	T
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K
Template Known Secondary structure				G	G	G		S								S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	H	P	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A
Template Known Secondary structure				S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		235	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	K	G	R	Y	E	M	V	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	H	L	K	R	V	D	G	V	X	L
Template Known Secondary structure						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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