Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 5 Aligned Residues 320 % Identity 24% Template c2zc8B_ PDB info PDB header:metal binding protein Chain: B: PDB Molecule:n-acylamino acid racemase; PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8 Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.					.
Query SS confidence																																																	.	.					.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	E	G	I	K	G	T	G	E	C	T	P	.	.	Y	P	R	Y	.	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E
Query Conservation																																																	.	.					.
Alig confidence																																																	.	.					.
Template Conservation
Template Sequence		I	E	A	A	E	L	R	I	L	E	L	P	L	K	F	R	F	E	T	S	F	G	V	Q	T	K	R	T	I	L	L	L	R	L	F	G	E	G	L	E	G	L	G	E	G	V	M	E	R	L	P	L	Y	R	E	E	T	V	A	G	A	R	Y	L	L	E	E	V	F	L	P	R	V	L	G	R	D	L	P	N
Template Known Secondary structure																					T	T																T	T										B	S	S		S	S	S	S		B											T						T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		78	.	80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure							.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.
Query Sequence		L	Q	K	I	L	.	.	.	.	.	.	.	P	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V
Query Conservation							.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	A	L	R	E	A	L	A	P	F	R	G	N	P	M	A	K	A	V	L	E	M	A	F	F	D	L	W	A	K	A	L	G	R	P	L	W	Q	V	L	G	G	V	R	Q	A	V	E	V	G	V	S	L	G	I	Q	P	S	V	E	D	T	L	R	V	V	E	R	H	L	E	E	G	Y	R	R	I	K	L
Template Known Secondary structure										T	T	S		S																					T	S	B						T				S				B								S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		K	L	D	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	.	.	H	P	L	P	I	C	A	D	E	S	C
Query Conservation																																																																					.	.
Alig confidence																																									.																												.	.
Template Conservation																																									.
Template Sequence		K	I	K	P	G	W	D	Y	E	V	L	K	A	V	R	E	A	F	P	E	A	T	L	T	A	D	A	N	S	A	Y	S	L	A	N	L	A	Q	L	.	K	R	L	D	E	L	R	L	D	Y	I	E	Q	P	L	A	Y	D	D	L	L	D	H	A	K	L	Q	R	E	L	S	T	P	I	C	L	D	E	S	L
Template Known Secondary structure				B	T	T	B	S												T	T	S							T	T				G	G	G					.			G	G	G	G	T		S						S		T	T		S											S	S					S	T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		229	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.
Predicted Secondary structure												.	.																																																										.	.	.
Query SS confidence												.	.																																																										.	.	.
Query Sequence		H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q	V	S	F	.	.	.	A	D	L	D	G	P	T	W
Query Conservation												.	.																																																										.	.	.
Alig confidence												.	.																																																										.	.	.
Template Conservation
Template Sequence		T	G	A	E	K	A	R	K	A	I	E	L	G	A	G	R	V	F	N	V	K	P	A	R	L	G	G	H	G	E	S	L	R	V	H	A	L	A	E	S	A	G	I	P	L	W	M	G	G	M	L	E	A	G	V	G	R	A	H	N	L	H	L	A	T	L	P	G	F	T	K	P	G	D	V	S	S	A	S	R
Template Known Secondary structure			S											T			S										T	S														T	T																						T	T	S	T	T	B		S		B	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		304	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	A	V	D	.	.	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		Y	W	E	E	D	I	V	E	E	A	L	E	A	K	D	G	L	M	P	V
Template Known Secondary structure		T		S	S		S	B	S	S					B	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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