Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 48 Aligned Residues 313 % Identity 17% Template c2ppgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti Resolution 2.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.											.
Query SS confidence																												.	.	.	.	.	.											.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	.	.	.	.	.	.	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L
Query Conservation																												.	.	.	.	.	.											.
Alig confidence																												.	.	.	.	.	.											.														.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		V	K	K	I	E	S	F	T	L	T	L	P	R	P	N	G	R	G	Y	L	V	R	K	A	N	R	T	V	Y	P	T	F	D	R	S	V	L	V	R	I	E	T	E	N	G	A	V	G	W	G	E	T	Y	G	L	V	.	.	.	.	A	P	R	A	T	X	E	I	I	D	D	L	L	A	D	F	T	I	G	R
Template Known Secondary structure																	T	T	S					T	T	T	T					S												T	T											S	S	.	.	.	.												T	T	G	G	G	T	T	T
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		74	.	.	.	.	.	80	.	.	.	.																.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		T	R	E	E	L	Q	K	I	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	.	G	T	P	D	Q	M	A	N	S	A
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		D	P	F	D	A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	Y	V	D	A	L	A	A	I	D	I	A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	G	Q	R	R	D	R	I	A	A	Y	I	S	G	L	P	E	D	T	R	A	K	R	A	E	L	A
Template Known Secondary structure			G	G	G											T	T	G	G	G	T		S	S																							T	S	B	G	G	G	G	T	T					S												S	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	D	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F
Query Conservation																																		.
Alig confidence																								.	.	.								.
Template Conservation																								.	.	.
Template Sequence		A	A	W	Q	A	K	G	F	S	S	F	K	F	A	S	P	V	A	K	E	X	E	.	.	.	I	L	R	E	R	L	G	P	A	V	R	I	A	C	D	X	H	W	A	H	T	A	S	E	A	V	A	L	I	K	A	X	E	P	H	G	L	W	F	A	E	A	P	V	R	T	E	D	I	D	G	L	A	R	V
Template Known Secondary structure						T	T	T																.	.	.								S	S	S								S															G	G	G									S		T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		217			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure			.	.																						.	.
Query SS confidence			.	.																						.	.
Query Sequence		I	.	.	H	P	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q
Query Conservation			.	.																						.	.
Alig confidence			.	.																						.	.													.
Template Conservation																																								.
Template Sequence		A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	A	L	A	I	V	Q	P	E	X	G	H	.	K	G	I	T	Q	F	X	R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A	A
Template Known Secondary structure			T	T		S	S						T	T			S	G	G	G	T						T	T			S									.																T	T									S	S		S
Template Predicted Secondary structure																																								.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		293	.	.	.	.	.						.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		V	S	F	A	D	L	.	.	.	.	.	D	G	P	T	W	L	A	V	D	V	E	P	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		L	A	N	V	D	C	H	E	F	Q	H	S	I	F	E	P	N	R	R	L	L	V	G	D	X	D	C	L	N	G	E	Y	V	V
Template Known Secondary structure			T	T	B											T	G	G	G	G	G				S					T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions