Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 35 Aligned Residues 314 % Identity 19% Template c2gdqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yitf; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	H	T	P	F	V	I	A	R	G	S	R	S	E	A	R	V	V	V	V	E	L	E	E	.	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q
Query Conservation																																						.
Alig confidence																																						.													.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		I	V	R	I	E	T	F	P	L	F	H	R	L	E	K	P	Y	G	D	A	N	G	F	K	R	Y	R	T	C	Y	L	I	R	I	I	T	E	S	G	I	D	G	W	G	E	C	V	D	W	.	.	.	.	.	.	L	P	A	L	H	V	G	F	T	K	R	I	I	P	F	L	L	G	K	Q	A	G	S	R	L
Template Known Secondary structure																					T	T																T	T	S									S		.	.	.	.	.	.											T						T	T	S	B	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.							.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.																																															.	.	.	.	.
Query SS confidence						.	.	.	.	.																																															.	.	.	.	.
Query Sequence		K	I	L	P	.	.	.	.	.	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	I	T	L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	.	.	.	.	.	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K
Query Conservation						.	.	.	.	.																																															.	.	.	.	.
Alig confidence						.	.	.	.	.																																															.	.	.	.	.
Template Conservation
Template Sequence		S	L	V	R	T	I	Q	K	W	H	Q	R	A	A	S	A	V	S	M	A	L	T	E	I	A	A	K	A	A	D	C	S	V	C	E	L	W	G	G	R	Y	R	E	E	I	P	V	Y	A	S	F	Q	S	Y	S	D	S	P	Q	W	I	S	R	S	V	S	N	V	E	A	Q	L	K	K	G	F	E	Q	I	K
Template Known Secondary structure									T	T																				T	T	S	B					T	T			S		S										B		B	S	S	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.
Predicted Secondary structure						.	.	.																	.																												.																						.	.
Query SS confidence						.	.	.																	.																												.																						.	.
Query Sequence		V	K	L	D	.	.	.	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	.	G	V	A	M	L	E	Q	P	L	P	A	Q	D	D	A	A	L	E	N	F	I	.	.	H	P	L	P	I
Query Conservation						.	.	.																	.																												.																						.	.
Alig confidence						.	.	.																	.																												.																						.	.
Template Conservation
Template Sequence		V	K	I	G	G	T	S	F	K	E	D	V	R	H	I	N	A	L	Q	H	T	A	G	S	S	I	T	M	I	L	D	A	N	Q	S	Y	D	A	A	A	A	F	K	W	E	R	Y	F	S	E	W	T	N	I	G	W	L	E	E	P	L	P	F	D	Q	P	Q	D	Y	A	M	L	R	S	R	L	S	V	P	V
Template Known Secondary structure					S	S	S																		T	T	S							T	T									T	T					T	T		S									S		S	S										T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.
Predicted Secondary structure																		.	.																																																										.	.	.
Query SS confidence																		.	.																																																										.	.	.
Query Sequence		C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.	G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q	V	S	F	.	.	.	A	D
Query Conservation																		.	.																																																										.	.	.
Alig confidence																		.	.																																							.																			.	.	.
Template Conservation																																																										.
Template Sequence		A	G	G	E	N	M	K	G	P	A	Q	Y	V	P	L	L	S	Q	R	C	L	D	I	I	Q	P	D	V	M	H	V	N	G	I	D	E	F	R	D	C	L	Q	L	A	R	Y	F	G	V	R	A	S	A	H	A	Y	.	D	G	S	L	S	R	L	Y	A	L	F	A	Q	A	C	L	P	P	W	S	K	M	K
Template Known Secondary structure					T	T			S										T	T			S						T	T	T	T	T	S															T								T	.	T		S												T	S			S	S	S		T
Template Predicted Secondary structure																																																										.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310								.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.
Query Sequence		L	D	G	P	T	W	L	A	V	D	V	E	P	.	.	.	.	.	.	.	A	L	Q	F	T	T	G	E	L	H	L
Query Conservation															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	D	H	I	E	P	I	E	W	D	V	M	E	N	P	F	T	D	L	V	S	L	Q	P	S	K	G	M	V	H	I
Template Known Secondary structure		T	S		S								S	S		G	G	G	G	S	B					B	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions