Job Description P51981 Confidence 38.19% Date Thu Jan 5 12:04:52 GMT 2012 Rank 250 Aligned Residues 75 % Identity 21% Template c1w7pD_ PDB info PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) Resolution 3.60 Å

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		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.												.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.									.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	G	A	K	L	L	K	V	K	L	D	N	.	.	.	.	.	.	.	.	.	.	.	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	D	A	T	L	I	.	.	.	.	.	.	.	.	V	D	A	N	E	S	W	R	A	E	G	L	A	A	R
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	M	E	M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	V	K	V	N	K	R	I	L	C	V	T	S	E	K	F	D	V	V	K	E	K	L	V	D	L	I	G	D	N	P	G	S	D	L	L	R	L	T	Q	I	L	S	S	N	N	S	K	S	N	W	T	L	G	I	L	M	E	V
Template Known Secondary structure											T	T	G	G	G	G	T		T	T							S	S	S						S	S														T	T	S	T	T											S		S	S	S				B
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	L	L	A	D	L	G	V	A	M	L	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	N	C	V	D	E	G	D	L	L	I	D	K
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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