Job Description P51981 Confidence 100.00% Date Thu Jan 5 12:04:52 GMT 2012 Rank 92 Aligned Residues 318 % Identity 15% Template c1kczA_ PDB info PDB header:lyase Chain: A: PDB Molecule:beta-methylaspartase; PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex. Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.																					.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.																				.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.																				.	.	.	.
Query Sequence		M	R	T	V	K	V	F	E	E	A	W	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	T	P	F	V	I	A	R	G	S	R	.	S	E	A	R	V	V	V	V	E	L	E	.	E	E	G	I	K	G	T	G	E	C	T	P	Y	P	R	Y	G	E	S	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.																				.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.												.																				.	.	.	.
Template Conservation
Template Sequence		I	V	D	V	L	C	T	P	G	L	T	G	F	Y	F	D	D	Q	R	A	I	K	K	G	A	G	H	D	G	F	T	Y	T	G	S	T	V	T	E	G	F	T	Q	V	R	Q	K	G	E	S	I	S	V	L	L	V	L	E	D	G	Q	V	A	H	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P
Template Known Secondary structure													S	S										T	T					T	T				S				S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
					55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.									.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.
Predicted Secondary structure		.	.	.																												.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																												.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	A	S	V	M	A	Q	I	M	S	V	V	P	Q	L	E	K	G	L	T	R	E	E	L	Q	K	I	.	.	.	.	.	.	.	.	L	P	A	G	A	A	R	N	A	L	D	C	A	L	W	D	L	A	A	R	R	Q	Q	Q	S	L	A	D	L	I	G	.	.	.	.	.	.	.	.	.	I	T
Query Conservation		.	.	.																												.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																												.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	L	A	K	D	F	I	P	V	I	E	K	E	I	A	P	K	L	I	G	R	E	I	T	N	F	K	P	M	A	E	E	F	D	K	M	T	V	N	G	N	R	L	H	T	A	I	R	Y	G	I	T	Q	A	I	L	D	A	V	A	K	T	R	K	V	T	M	A	E	V	I	R	D	E	Y	N	P	G	A
Template Known Secondary structure																T					T	T		B																	T	T																								T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.											.	.	.	.	.	.	.	.	.																	.								.	.	.	.
Query SS confidence																															.	.	.	.											.	.	.	.	.	.	.	.	.																	.								.	.	.	.
Query Sequence		L	P	E	T	V	I	T	A	Q	T	V	V	I	G	T	P	D	Q	M	A	N	S	A	S	T	L	W	Q	A	.	.	.	.	G	A	K	L	L	K	V	K	L	D	.	.	.	.	.	.	.	.	.	N	H	L	I	S	E	R	M	V	A	I	R	T	A	V	P	.	D	A	T	L	I	V	D	.	.	.	.
Query Conservation																															.	.	.	.											.	.	.	.	.	.	.	.	.																	.								.	.	.	.
Alig confidence																															.	.	.	.											.	.	.	.	.	.	.	.	.																	.								.	.	.	.
Template Conservation
Template Sequence		E	I	N	A	V	P	V	F	A	Q	S	G	D	D	R	Y	D	N	V	D	K	M	I	I	K	E	A	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	L	K	G	E	K	L	L	E	Y	V	K	W	L	R	D	R	I	I	K	L	R	V	R	E	D	Y	A	P	I	F	H	I	D	V	Y	G	T
Template Known Secondary structure													T	T		T	T									T	T		S																T	T	S																			S	S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
				177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.										.	.	.	.											.	.	.	.	.	.	.																				.	.
Query SS confidence		.	.																									.	.	.										.	.	.	.											.	.	.	.	.	.	.																				.	.
Query Sequence		.	.	A	N	E	S	W	R	A	E	G	L	A	A	R	C	Q	L	L	A	D	L	G	V	A	M	.	.	.	L	E	Q	P	L	P	A	Q	D	.	.	.	.	D	A	A	L	E	N	F	I	H	P	.	.	.	.	.	.	.	L	P	I	C	A	D	E	S	C	H	T	R	S	N	L	K	A	L	K	.	.
Query Conservation		.	.																									.	.	.										.	.	.	.											.	.	.	.	.	.	.																				.	.
Alig confidence		.	.																									.	.	.										.	.	.	.											.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		I	G	A	A	F	D	V	D	I	K	A	M	A	D	Y	I	Q	T	L	A	E	A	A	K	P	F	H	L	R	I	E	G	P	M	D	V	E	D	R	Q	K	Q	M	E	A	M	R	D	L	R	A	E	L	D	G	R	G	V	D	A	E	L	V	A	D	E	W	C	N	T	V	E	D	V	K	F	F	T	D	N
Template Known Secondary structure						T	T	T																	T	T	S							S	B			S	S																			T									T	T			S										T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.										.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.
Query Sequence		G	R	Y	E	M	V	N	I	K	L	D	K	T	G	G	L	T	E	A	L	A	L	A	T	E	A	R	A	Q	G	F	S	L	M	L	G	C	M	L	C	T	S	R	A	I	S	A	A	L	P	L	V	P	Q	V	S	F	A	D	L	.	.	.	.	.	.	.	.	.	D	G	P	T	W	L	A	V	D	V	E
Query Conservation																																																														.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	G	H	M	V	Q	I	K	T	P	D	L	G	G	V	N	N	I	A	D	A	I	M	Y	C	K	A	N	G	M	G	A	Y	C	G	G	T	N	E	T	N	R	S	A	E	V	T	T	N	I	G	M	A	C	G	A	R	Q	V	L	A	K	P	G	M	G	V	D	E	G	M	M	I	V	K	N	E	M	N
Template Known Secondary structure		T		S	S						T	G	G	G	S	S	T													T	T																										T		S						S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	Q	F	T	T	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	L	A	L	V	G	R	R
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions