Job Description P75856 Confidence 24.87% Date Thu Jan 5 12:15:05 GMT 2012 Rank 61 Aligned Residues 146 % Identity 10% Template c1l5gA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand Resolution 3.20 Å

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		35	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																										.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	T	R	L	V	Y	S	E	G	E	E	.	Q	I	S	L	G	V	R	N	T	S	P	D	V	P	Y	L	I	Q	S	W	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	N	K	K	S	A	D	F	I	I	T	P	P	L	F	V	L	N
Query Conservation														.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																												.																																																	.	.	.
Template Sequence		D	Q	K	K	I	Y	I	G	D	D	N	P	L	T	L	I	V	K	A	Q	N	Q	G	E	G	A	.	Y	E	A	E	L	I	V	S	I	P	L	Q	A	D	F	I	G	V	V	R	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	P	.	.	.	M	K
Template Known Secondary structure		T	T					S	S	S														S	S		B	.	S	S									S	S									S		S	S	S	B										S	S	S									S	S	.	.	.	B
Template Predicted Secondary structure																												.																																																	.	.	.
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.		.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.				.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		P	A	N	E	N	L	L	R	I	M	Y	I	G	A	P	L	A	K	D	R	E	T	L	F	F	T	S	V	R	A	V	P	S	T	T	K	R	K	E	G	N	T	L	K	I	A	T	Q	S	V	I	K	L	F	W	R	P	K	G	L	A	Y	P	L	G	E	A	P	A	K	L	R	C	T	S	S	A	D	M	.
Query Conservation																																																																																	.
Alig confidence																					.																																																												.
Template Conservation																					.
Template Sequence		A	G	T	Q	L	L	A	G	L	R	F	S	V	H	Q	Q	S	E	M	.	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	F	D	K	V	S	P	V	V	S	H	K	V	D	L	A	V	L	A	A	V	E	I	R	G	V	S	S	P	D	H	V	F	L	P	I	P	N	W	E	H	K	E	N	P	E
Template Known Secondary structure		T	T					B										T	T		.		S											S		S	S	S		B																							S	S	S				T	T		S	S					S	S
Template Predicted Secondary structure																					.
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.		.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
														168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	S	N	P	T	P	Y	F	I	T	L	T	D	L	K	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	E	D	V	G	P	V	V	Q	H	I	Y	E	L	R	N	N	G	P	S	S	F	S	K	A	M	L	H	L
Template Known Secondary structure		S																		S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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