Job Description P16694 Confidence 99.93% Date Thu Jan 5 11:35:44 GMT 2012 Rank 6 Aligned Residues 420 % Identity 16% Template c3snhA_ PDB info PDB header:endocytosis Chain: A: PDB Molecule:dynamin-1; PDBTitle: crystal structure of nucleotide-free human dynamin1 Resolution 3.70 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		Q	P	N	I	A	E	R	H	A	M	L	N	N	E	L	R	K	I	S	R	L	E	M	.	.	.	.	V	L	A	I	V	G	T	M	K	A	G	K	S	T	T	I	N	A	I	V	G	T	E	V	L	P	N	R	N	R	P	M	T	A	L	P	T	L	I	R	H	T	P	G	Q	K	E	P	V	L	H	F	S
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																														.	.
Template Conservation																																																										.	.
Template Sequence		M	E	D	L	I	P	L	V	N	R	L	Q	D	A	F	S	A	I	G	Q	N	A	D	L	D	L	P	Q	I	A	V	V	G	G	Q	S	A	G	K	S	S	V	L	E	N	F	V	G	R	D	F	L	P	R	G	S	.	.	G	T	R	R	P	L	V	L	Q	L	V	N	A	T	T	E	Y	A	E	F	L	H
Template Known Secondary structure			T	T														T	T	T			S	S	S											T	T												T	S			S		S	S		.	.				S										S	S						T	T
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	A	P	I	D	C	L	I	Q	Q	L	Q	Q	R	L	R	D	C	D	I	K	H	L	T	D	V	L	E	I	D	K	D	M	R	A	L	M	Q	R	I	E	N	G	V	A	F	E	K	Y	Y	L	G	A	Q	P	I	F	H	C	L	K	S	L	N	D	L	V	R	L	A	K	A	L	D	V	D	F	P	F
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	K	G	K	K	F	T	D	F	E	E	V	R	L	E	I	E	A	E	T	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S			B																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280
Predicted Secondary structure																																												.																.																	.
Query SS confidence																																												.																.																	.
Query Sequence		S	A	Y	A	A	I	E	H	I	P	V	I	E	V	E	F	V	H	L	A	G	L	E	S	Y	P	G	Q	L	T	L	L	D	T	P	G	P	N	E	A	G	Q	.	P	H	L	Q	K	M	L	N	Q	Q	L	A	R	A	S	.	A	V	L	A	V	L	D	Y	T	Q	L	K	S	I	S	D	.	E	E	V	R
Query Conservation																																												.																.																	.
Alig confidence		.	.	.	.																					.	.	.																.																.																	.
Template Conservation		.	.	.	.																					.	.	.
Template Sequence		.	.	.	.	V	T	K	G	I	S	P	V	P	I	N	L	R	V	Y	S	P	H	V	L	.	.	.	N	L	T	L	V	D	L	P	G	M	T	K	P	D	I	E	F	Q	I	R	D	M	L	M	Q	F	V	T	K	E	N	C	L	I	L	A	V	S	P	A	N	S	D	L	A	N	S	D	A	L	K	V	A
Template Known Secondary structure		.	.	.	.	T						S										S	S	S		.	.	.	S																												S	T	T									T	T	S		S	T	T
Template Predicted Secondary structure		.	.	.	.																					.	.	.
Template SS confidence
						108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	L	A	V	G	Q	S	V	P	L	Y	V	L	V	N	K	F	D	Q	Q	D	R	N	S	D	D	A	D	Q	V	R	A	L	I	S	G	T	L	M	K	G	C	I	T	P	Q	Q	I	F	P	V	S	S	M	W	G	Y	L	A	N	R	A	R	Y	E	L	A	N	N	G	K	L	P	P	P	E	Q	Q
Query Conservation
Alig confidence									.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	V	D	P	Q	G	.	.	Q	R	T	I	G	V	I	T	K	L	D	L	M	D	E	G	T	D	A	R	D	V	L	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	P	L	R	R	G	Y	I	G	V	V	N	R	S	Q	K	D	I	D	G	K	K	D	I	T	A	A	L	A	A
Template Known Secondary structure						S	S	S	.	.	S	S								S	T	T	S		T	T								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			S	S													S	S	S	S
Template Predicted Secondary structure									.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.															.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	V	E	D	F	A	H	A	A	L	G	R	R	W	R	H	A	D	L	A	D	L	E	H	I	R	H	A	A	D	Q	L	W	E	D	S	L	F	A	Q	P	I	Q	A	L	L	H	A	A	Y	A	N	A	S	L	Y	A	L	R	S	A	A	H	K	L	L	N	Y	A	Q	Q	A	R	E	Y	L	D	F	R
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	K	F	F	L	S	H	P	S	Y	R	H	L	A	D	R	M	G	T	P	Y	L	Q	K	V	L	N	Q	Q	L	T	N	H	I	R	D	T	L	P	G	L	R	N	K	L	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	S	I	E	K	E	V	E	E	Y	K	N	F	R
Template Known Secondary structure								T						T	T	T	T	T	S	S																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	S	S	S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	G	L	N	V	A	C	E	Q	L	R	Q	N	I	H	Q	I	E	E	S	L	Q	L	L	Q	L	N	Q	A	Q	V	S	G	E	I	K	H	E	I	E	L	A	L	T	S	A	N	H	F	L	R	Q	Q	Q	D	A	L	K	V	Q	L	A	A	L	F	Q	D	D	S	E	P	L	S	E	I	R	T	R	C
Query Conservation
Alig confidence																															.	.
Template Conservation																															.	.
Template Sequence		P	D	D	P	A	R	K	T	K	A	L	L	Q	M	V	Q	Q	F	A	V	D	F	E	K	R	I	E	G	S	.	.	G	G	A	R	I	N	R	I	F	H	E	R	F	P	F	E	L	V	K	M	E	F	D	E	K	E	L	R	R	E	I	S	Y	A	I	K	P	D	M	A	F	E	T	I	V	K	K	Q	V
Template Known Secondary structure		S														T	T														.	.																				T	S																												G
Template Predicted Secondary structure																															.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.																540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	L	L	Q	T	A	Q	N	T	I	S	R	D	F	T	L	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	E	S	T	L	C	R	V	L	T	D	V	I	R	P	I	E	Q	Q	V	K	M	E	L	S	E	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	I	R	E	P	C	L	K	C	V	D	M	V	I	S	E	L	I	S	T	V	R	Q	C	T	K	K	Q	Y	P	R	L	R	E	E	M	E	R	I	V	T	T	H	I	R	E	R	E	G	R	T	K	E	Q	V	M	L	L	I	D	I	E
Template Known Secondary structure		G	G	G																	T	T	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480