Job Description P16694 Confidence 96.26% Date Thu Jan 5 11:35:44 GMT 2012 Rank 301 Aligned Residues 123 % Identity 23% Template c3l2oB_ PDB info PDB header:protein binding/cell cycle Chain: B: PDB Molecule:f-box only protein 4; PDBTitle: structure-based mechanism of dimerization-dependent ubiquitination by2 the scffbx4 ubiquitin ligase Resolution 2.80 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure															.														.						.	.	.	.	.
Query SS confidence															.														.						.	.	.	.	.
Query Sequence		I	S	R	L	E	M	V	L	A	I	V	G	T	.	M	K	A	G	K	S	T	T	I	N	A	I	V	.	G	T	E	V	L	.	.	.	.	.	P	N	R	N	R	P	M	T	A	L	P	T	L	I	R	H	T	P	G	Q	K	E	P	V	L	H	F	S	H	V	A	P	I	D	C	L	I	Q	Q	L	Q	Q
Query Conservation															.														.						.	.	.	.	.
Alig confidence															.														.						.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	Q	N	E	P	R	F	A	M	F	G	P	G	L	E	E	L	N	T	S	L	V	L	S	L	M	S	S	E	E	L	C	P	T	A	G	L	P	Q	R	Q	I	D	G	I	G	S	G	V	N	F	Q	L	N	N	Q	H	K	F	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T					S	S	S							T	T		G	G	G							S	T	T	T		S	S	S									T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	R	D	C	D	I	K	H	L	T	D	V	L	E	I	D	K	D	M	R	A	L	M	Q	R	I	E	N	G	V	A	F	E	K	Y	Y	L	G	A	Q	P	I	F	H	C	L	K	S	L	N	D	L	V	R	L	A	K	A	L	D	V	D	F	P	F	S	A	Y	A	A	I	E	H	I	P	V	I	E	V
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.
Predicted Secondary structure																																																										.	.	.	.														.	.
Query SS confidence																																																										.	.	.	.														.	.
Query Sequence		E	F	V	H	L	A	G	L	E	S	Y	P	G	Q	L	T	L	L	D	T	P	G	P	N	E	A	G	Q	P	H	L	Q	K	M	L	N	Q	Q	L	A	R	A	S	A	V	L	A	V	L	D	Y	T	Q	L	K	S	.	.	.	.	I	S	D	E	E	V	R	E	A	I	L	A	V	.	.	G	Q	S	V	P
Query Conservation																																																										.	.	.	.														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.																									.	.	.	.														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	L	Y	S	T	T	R	R	Y	S	V	I	.	.	.	.	.	P	Q	I	Q	K	V	C	E	V	V	D	G	F	I	Y	V	A	N	A	E	A	H	K	R	H	E	W	Q	D	E	F	S	H	I	M	A	M	T	D	P	A	F	G	S	S	G	R	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.				S										.	.	.	.	.											S							B		B	T	T																							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template SS confidence
																234	.	.	.	.	.	240	.	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		292	.	.	.	.	.		.	.	300	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	Y	V	L	V	N	.	K	F	D	Q	Q	D	R
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		L	L	V	L	S	C	I	S	Q	G	D	V	K	R
Template Known Secondary structure									S	S	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions