Phyre 2 alignment of P16694 with c3cx6A

Job Description P16694
Confidence 97.38% Date Thu Jan 5 11:35:44 GMT 2012

Rank 233 Aligned Residues 237

% Identity 13% Template c3cx6A_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:guanine nucleotide-binding protein alpha-13 PDBTitle: crystal structure of pdzrhogef rgrgs domain in a complex2 with galpha-13 bound to gdp

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	E	M	V	L	A	I	V	G	T	M	K	A	G	K	S	T	T	I	N	A	I	V	G	T	E	V	L	P	N	R	N	R	P	M	T	A	L	P	T	L	I	R	H	T	P	G	Q	K	E	P	V	L	H	F	S	H	V	A	P	I	D	C	L	I	Q	Q	L	Q	Q	R	L	R	D	C	D	I	K	H	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	L	V	K	I	L	L	L	G	A	G	E	S	G	K	S	T	F	L	K	Q	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	I	H	G	Q	D	F	D	Q	R	A	R	E	E	F	R	P	T	I	Y	S	N	V	I	K	G	M	R	V	L	V	D	A	R	E	K	L	H	I
Template Known Secondary structure										S	T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S										T	T																						T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																																		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	D	V	L	E	I	D	K	D	M	R	A	L	M	Q	R	I	E	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	F	E	K	Y	Y	L	G	A	Q	P	I	F	H	C	L	K	S	L	N	D	L	V	R	L	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	W	G	D	N	K	N	Q	L	H	G	D	K	L	M	A	F	D	T	R	A	P	M	A	A	Q	G	M	V	E	T	R	V	F	L	Q	Y	L	P	A	I	R	A	L	W	E	D	S	G	I	Q	N	A	Y	D	R	R	R	E	F	Q	L	G	E	S	V	K	Y	F	L	D	N	L	D	K	L	G	V	P	D
Template Known Secondary structure			S		G	G	G									T	S		T	T	S					T	T																													T	G	G	G	S				T							T	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence	K	A	L	D	V	D	F	P	F	S	A	Y	A	A	I	E	H	I	P	V	I	E	V	E	F	V	H	L	A	G	L	E	S	Y	P	G	Q	L	T	L	L	D	T	P	G	P	N	E	A	G	Q	P	H	L	Q	K	M	L	N	Q	Q	L	A	R	A	S	A	V	L	A	V	L	D	Y	T	Q	L	K	S	.
Query Conservation																																																																																.
Alig confidence																										.	.	.	.	.	.	.	.																.	.	.	.	.																											.
Template Conservation																										.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence	Y	I	P	S	Q	Q	D	I	L	L	A	R	R	P	T	K	G	I	H	E	Y	D	F	E	I	.	.	.	.	.	.	.	.	K	N	V	P	F	K	M	V	D	V	G	G	L	R	S	.	.	.	.	.	E	R	K	R	W	F	E	C	F	D	S	V	T	S	I	L	F	L	V	S	S	S	E	F	D	Q	V
Template Known Secondary structure																	S									.	.	.	.	.	.	.	.	T	T											S	T	T	.	.	.	.	.	T	G	G	G	G	G	G	G		T	T										T	T	G	G	G		B
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

											274	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	I	S	D	E	E	V	R	E	A	I	L	A	V	G	.	.	Q	S	V	P	L	Y	V	L	V	N	K	F	D	Q	Q	D	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	D	A	D	Q	V	R	A	L	I	S	G	T	L	M	K	G	C	I
Query Conservation	.	.	.	.	.	.	.	.	.	.															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	M	E	D	R	Q	T	N	R	L	T	E	S	L	N	I	F	E	T	I	V	N	N	R	V	F	S	N	V	S	I	I	L	F	L	N	K	T	D	L	L	E	E	K	V	Q	V	V	S	I	K	D	Y	F	L	E	F	E	G	D	P	H	C	L	R	D	V	Q	K	F	L	V	E	C	F	R	G	K	R	R
Template Known Secondary structure		S	S	S	T	T	S	B														T		G	G	G	T	T	S																T	T	T			G	G	G	T		T	T			S		T	T															T	T
Template Predicted Secondary structure
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

		326	.	.	.	330	.	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	T	P	Q	Q	I	F	P	V	S	S
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	D	R	P	L	Y	H	H	F	T	T	A
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
	336	.	.	.	340	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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