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Job DescriptionP16694
Confidence97.18%DateThu Jan 5 11:35:44 GMT 2012
Rank242Aligned Residues125
% Identity21%Templatec3cpjB_
PDB info PDB header:protein transportChain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120.........130.........140.........
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Query Sequence  MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD
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Template Sequence  FKIVLIGDSGVGKSNLLSRFTKNEF. NMGVEFATRTLEIEGKRI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
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   14.....20.........30........ .40.........50......
 
   150.........160.........170.........180.........190.........200.........210.........220.........
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Query Sequence  VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP
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   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA
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Template Sequence  . KAQIWDTAGQERYRAITS. . . . . AYYRGAVGALIVYDSKSSSYENCNHWLSELRENAD. VAVGLIGNKSDLAHLRAVPT
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   63......70.........80 .........90.........100.........110..... ....120.........130.....
 
   310........
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Query Sequence  DQVRALISG
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Template Sequence  EESKTFAQE
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   139140.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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