Return to main results Retrieve Phyre Job Id

Job DescriptionP16694
Confidence99.96%DateThu Jan 5 11:35:44 GMT 2012
Rank2Aligned Residues316
% Identity19%Templatec2x2fD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:dynamin-1; PDBTitle: dynamin 1 gtpase dimer, short axis form
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.........120.....
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  WSQPNIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHV
Query Conservation                            


 
  












   

      
     
                
Alig confidence 























.






















































Template Conservation       
      
          
. 
 
 
  












  


    
 
   
 
                
Template Sequence  FSXEDLIPLVNRLQDAFSADLDLP. QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCK
Template Known Secondary structure 

GGGG







.
BTTSSTTT
SS
S


SSS


S

SS
TTST
Template Predicted Secondary structure 








.
























Template SS confidence 















































































   4.....10.........20....... ..30.........40.........50.........60.........70.........80..
 
   126...130.........140.........150.........160.........170.........180.........190.........200.....
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  APIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSA
Query Conservation                                                                                  
Alig confidence 












.............................................................





Template Conservation               .............................................................      
Template Sequence  GKKFTDFEEVRLE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IEAETD
Template Known Secondary structure  T

B

.............................................................
Template Predicted Secondary structure 





.............................................................
Template SS confidence 















































































   88.90.........100 ......
 
   206...210.........220.........230.........240....... ..250.........260. ........270......
Predicted Secondary structure 

























........

.






Query SS confidence 









































. . . . . . . .













.














Query Sequence  YAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPH. . . . . . . . LQKMLNQQLARASA. VLAVLDYTQLKSISD
Query Conservation                 
          
 


 

        ........              .
  
           
Alig confidence 






















.

















........













.














Template Conservation                 
    
 
.    





                       
       

 
  
        
Template Sequence  RVTGTNKGISPVPINLRVYSPHV. LNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSD
Template Known Secondary structure 
SSS



S
TT
.
S


B
SS

TT

TTTSTTTTS
GGG
Template Predicted Secondary structure 














.



























Template SS confidence 















































































   107..110.........120......... 130.........140.........150.........160.........170.........180.....
 
   277..280.........290.........300.........310.........320.........330.........340.........350.....
Predicted Secondary structure  .




















Query SS confidence  .














































































Query Sequence  . EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLP
Query Conservation  .                  
 

 
                   
         
   
    
                
Alig confidence  .










..



















....









































Template Conservation              ..     
 

 
         ....                                     
    
Template Sequence  ALKVAKEVDPQG. . QRTIGVITKLDLXDEGTDAR. . . . DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF
Template Known Secondary structure 
TT
..SS
GGGS
TT


....TT
SS

TT





TT

Template Predicted Secondary structure 




..









....













Template SS confidence 















































































   186...190....... ..200.........210....... ..220.........230.........240.........250.........
 
   356...360.........370.........380.........390.........400.........410.........420.........430.....
Predicted Secondary structure 

Query SS confidence 















































































Query Sequence  PPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQARE
Query Conservation                                           
        
                   
      
  
Alig confidence 









.............................






















.
















Template Conservation            .............................       
   
   
       .
      
   
     
Template Sequence  LSHPSYRHLA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . DRXGTPYLQKVLNQQLTNHIRDT. LPGLRNKLQSQLLSIEK
Template Known Secondary structure 
TTTGGGG.............................GG
ST.
Template Predicted Secondary structure 






.............................

.
Template SS confidence 















































































   260......... 270.........280.........290.. .......300.........
 
   436...440 .........450.........460
Predicted Secondary structure  .....
Query SS confidence 




. . . . .



















Query Sequence  YLDFR. . . . . AHGLNVACEQLRQNIHQIEE
Query Conservation       .....   
      
      
  
Alig confidence 




.....



















Template Conservation   
  
       
  
    
        
Template Sequence  EVEEYKNFSRVDEXLRXYHALKEALSIIGN
Template Known Secondary structure  T




Template Predicted Secondary structure 







Template SS confidence 





























   310.........320.........330.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions