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Job DescriptionP16694
Confidence97.73%DateThu Jan 5 11:35:44 GMT 2012
Rank194Aligned Residues145
% Identity17%Templatec2oilA_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120.........130.........140.........
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Query Sequence  MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD
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Template Sequence  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSTTSSS


SS



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   13......20.........30.........40.........50.........60
 
   150.........160.........170.........180.........190.........200.........210.........220.........
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Query Sequence  VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP
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   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA
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Template Sequence  . VKAQIWDTAGLERYRAITSAYY. . RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT
Template Known Secondary structure  .S


TT
TT..TT

TT
TTTS
TT

GGGGGG

S
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   61........70.........80.. .......90.........100.........110.........120.........130.......
 
   310.........320.........330......
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Query Sequence  DQVRALISGTLMKGCITPQQIFPVSSM
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Template Sequence  EEARMFAENNGLL. . . . . . . FLETSAL
Template Known Secondary structure  TT
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TT
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   138.140.........150 .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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