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Job DescriptionP16694
Confidence96.89%DateThu Jan 5 11:35:44 GMT 2012
Rank269Aligned Residues158
% Identity19%Templatec2j289_
PDB info PDB header:ribosomeChain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
Resolution8.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   66...70.........80.........90.........100.........110.........120.........130.........140.....
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Query Sequence  SRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIK
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Template Sequence  AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IK
Template Known Secondary structure  SSSS

SSSSSSTTTTSSS



B




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   97..100.........110.........120.........130.........140.... ..
 
   146...150.........160.........170.........180.........190.........200.........210.........220.....
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Query Sequence  HLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGL
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Template Sequence  QLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT





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   147..150.........160.........170.........180....
 
   226...230.........240.........250....... ..260.........270.........280.........290.........300...
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Query Sequence  ESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLA. . RASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD
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Template Sequence  . . . . . DVLLVDTAGRLHVDEAMMDEI. KQVHASINPVETLFVVDAMTG. . QDAANTAKAFNEALPLT. . GVVLTKVDGDA
Template Known Secondary structure  .....S




SS.

STTTG..GGGTT
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   185....190.........200..... ....210.........220...... ...230.........240... ......250....
 
   304.
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Query Sequence  RN
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Template Sequence  RG
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   255.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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