Job Description P16694 Confidence 99.50% Date Thu Jan 5 11:35:44 GMT 2012 Rank 21 Aligned Residues 157 % Identity 29% Template c1wf3A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8 Resolution 1.88 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		V	L	A	I	V	G	T	M	K	A	G	K	S	T	T	I	N	A	I	V	G	T	E	V	L	P	N	R	N	R	P	.	M	T	A	L	P	T	L	I	R	H	T	P	G	Q	K	E	P	V	L	H	F	S	H	V	A	P	I	D	C	L	I	Q	Q	L	Q	Q	R	L	R	D	C	D	I	K	H	L	T	D
Query Conservation																																	.
Alig confidence																																	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	A	I	V	G	K	P	N	V	G	K	S	T	L	L	N	N	L	L	G	V	K	V	A	P	I	S	P	R	P	Q	T	T	R	K	R	L	R	G	I	L	T	E	G	R	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	T	T	S	S										T	S			S				S	S	S					S									T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	I	D	K	D	M	R	A	L	M	Q	R	I	E	N	G	V	A	F	E	K	Y	Y	L	G	A	Q	P	I	F	H	C	L	K	S	L	N	D	L	V	R	L	A	K	A	L	D	V	D	F	P	F	S	A	Y	A	A	I	E	H	I	P	V	I	E	V	E	F	V	H	L	A	G	L	E	S	Y	P
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		G	Q	L	T	L	L	D	T	P	G	P	N	E	A	G	Q	P	H	.	.	.	L	Q	K	M	L	N	Q	Q	L	A	R	A	S	A	V	L	A	V	L	D	Y	T	Q	L	K	S	I	S	D	E	E	V	R	E	A	I	L	A	V	G	Q	S	V	P	L	Y	V	L	V	N	K	F	D	Q	Q	D	R	N	S
Query Conservation																				.	.	.
Alig confidence		.	.																	.	.	.
Template Conservation		.	.
Template Sequence		.	.	I	V	F	V	D	T	P	G	L	H	K	P	M	D	A	L	G	E	F	M	D	Q	E	V	Y	E	A	L	A	D	V	N	A	V	V	W	V	V	D	L	R	H	P	P	T	P	E	D	E	L	V	A	R	A	L	K	P	L	V	G	K	V	P	I	L	L	V	G	N	K	L	D	A	A	K	Y	P	E
Template Known Secondary structure		.	.														S														T	S	S		S								T	T	S														G	G	G	T	T	T	S									G	G	G		S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	A	D	Q	V	R	A	L	I	S	G	T	L	M	K	G	C	I	T	P	Q	Q	I	F	P	V	S	S	M	W	G	Y	L	A	N	R	A	R	Y	E	L	A	N
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		E	A	M	K	A	Y	H	E	.	.	.	.	.	.	.	.	.	L	L	P	E	A	E	P	R	M	L	S	A	L	D	E	R	Q	V	A	E	L	K	A	D	L	L	A
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	T	S	T	T	S							T	T														T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions