Return to main results Retrieve Phyre Job Id

Job DescriptionP16694
Confidence99.28%DateThu Jan 5 11:35:44 GMT 2012
Rank45Aligned Residues143
% Identity29%Templatec1udxA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:the gtp-binding protein obg; PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
Resolution2.07 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   72.......80.........90.........100.........110.........120.........130.........140.........150.
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Query Sequence  LAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVL
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Template Sequence  VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   160.........170.........180.........190.........200.....
 
   152.......160.........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  EIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQ
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   206
 
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Query Sequence  LTLLDTPGPNEAGQPHLQ. . KMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQS. . . VPLYVLVNKFDQQDRNS
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Template Sequence  FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE. . .
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   207..210.........220.........230.........240.........250.........260.........270.........280...
 
   307..310.........320.........330......
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Query Sequence  DDADQVRALISGTLMKGCITPQQIFPVSSM
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Template Sequence  . . . . . . EEAVKALADALAREGLAVLPVSAL
Template Known Secondary structure  ......TTTS


TT
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   284.....290.........300.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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