Return to main results Retrieve Phyre Job Id

Job DescriptionP16694
Confidence98.62%DateThu Jan 5 11:35:44 GMT 2012
Rank108Aligned Residues138
% Identity26%Templatec1r5nA_
PDB info PDB header:translationChain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90. ........100.........110.........120.........130.........140....
Predicted Secondary structure 









..
























Query SS confidence 
























. .




















































Query Sequence  RLEMVLAIVGTMKAGKSTTINAIVG. . TEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDI
Query Conservation       


 
  












..   

      
     
                                   
Alig confidence 
























..

























...........................
Template Conservation 
    
 





 




   

   
          
 
            ...........................
Template Sequence  KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKRAYFETEHRR. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

TTSSTTSS




SS...........................
Template Predicted Secondary structure 
















...........................
Template SS confidence 















































































   236...240.........250.........260.........270.........280........
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  KHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAG
Query Conservation                                                                              
   
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   225....230.........240.........250.........260.........270. ........280.........290....
Predicted Secondary structure 























..........







Query SS confidence 














































. . . . . . . . . .






















Query Sequence  LESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL. . . . . . . . . . KSISDEEVREAILAVGQSVPLYV
Query Conservation         
 


 

                      
  
      ..........                       
Alig confidence  .......










................












..........











....






Template Conservation  .......
  

 


  ................     
 

       
      

 


     
....

  


Template Sequence  . . . . . . . FSLLDAPGASQ. . . . . . . . . . . . . . . . ADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ. . . . GINHLVV
Template Known Secondary structure  .......



TTS................
S
STTTTSSS

T....T
SS
Template Predicted Secondary structure  .......


................






....


Template SS confidence 















































































   318.320........ .330.........340.........350.........360... ......370
 
   295....300.. .......310.........320..... ....330........
Predicted Secondary structure 


..





....





Query SS confidence 







. .






















. . . .












Query Sequence  LVNKFDQQ. . DRNSDDADQVRALISGTLMKGCI. . . . TPQQIFPVSSMWG
Query Conservation 
 

 
  ..                 
     ....    
   
    
Alig confidence 







..






















....












Template Conservation   


 
             
       
              




  
Template Sequence  VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG
Template Known Secondary structure 
SSSTT
SS



TTTT

BTTTT
Template Predicted Secondary structure 






















Template SS confidence 

















































   382.......390.........400.........410.........420.........430.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions