 |
Job Description | P76507 | Confidence | 3.79% | Date | Thu Jan 5 12:23:44 GMT 2012 |
Rank | 41 | Aligned Residues | 59 |
% Identity | 12% | Template | c2qw4D_ |
PDB info |
PDB header:hormone receptor | Chain: D: PDB Molecule:orphan nuclear receptor nr4a1; |
PDBTitle: human nr4a1 ligand-binding domain
|
Resolution | 2.80 Å |
|
 |
  |   |
251 | . | . | . | . | . | . | . | . | 260 | |
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Y | K | M | P | S | Y | V | D | D | . |
K | C | V | G | L | D | A | W | G | N | K | F | D | I | S | F | G | A | T | P | T | E | V | G | T | E | C | F | E | S | H | K | D | E | T | F | S | N | A | L | F | L | L | V | S | K | P | S | T | I | F | K | L | P |
Query Conservation |   |
  |
|
|
|   |
|
|
|
|   | . |   |
|   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |
|
|   |
|
|
|   |
|
|   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |
|
|   |   |
|   |
|
|
|
|
|
|
|
|   |   |   |   | . | . | . |   |   |
|   |   |   |   |   |
|   |   |
|
|   |   | . | . |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |   |
|
|
Template Sequence |   |
S | R | S | L | H | S | L | L | V | D | V | P | A | F | A | C | L | S | A | L | V | L | I | T | D | R | . |
. |
. |
H | G | L | Q | E | P | R | R | V | E | E | L | Q | N | R | . |
. |
I | A | S | C | L | K | E | H | V | A | A | V | S | C | L | S | R | L | L |
Template Known Secondary structure |   |
 |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
| . | . | . | T | T |
| S | S |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
|
|
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | |
|
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|