 |
| Job Description | P76507 | | Confidence | 4.42% | Date | Thu Jan 5 12:23:44 GMT 2012 |
| Rank | 33 | Aligned Residues | 59 |
| % Identity | 5% | Template | c2hc4A_ |
| PDB info |
PDB header:gene regulation | Chain: A: PDB Molecule:vitamin d receptor; |
PDBTitle: crystal structure of the lbd of vdr of danio rerio in2 complex with calcitriol
|
| Resolution | 2.20 Å |
|
| | |
252 | . | . | . | . | . | . | . | 260 | |
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 310 | . | . | . | . |
| Predicted Secondary structure | |
 | | | | |
|
|
|
| . | | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | |
|
|
| | | | | | | | | | . | . | . | . | . | |
| | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
Y | K | M | P | S | Y | V | D | D | . |
K | C | V | G | L | D | A | W | G | N | K | F | D | I | S | F | G | A | T | P | T | E | V | G | T | E | C | F | E | S | H | K | D | E | T | F | S | N | A | L | F | L | L | V | . |
. |
. |
. |
. |
S | K | P | S | T | I | F | K | L | P |
| Query Conservation | |
|
|
| |
|
|
|
| | . | |
| |
| | |
|
| |
| |
| | | | | | |
| | | | | | | | | |
|
| | | | | |
| | |
|
| |
|
|
| . | . | . | . | . | |
|
| | | |
|
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
| | |
| |
| | | |
| | |
|
|
|
|
|
|
| | |
|
| . | . | | | |
| | | | | |
| | |
|
| | | | | . | . | |
|
| | |
| | | | | |
| | | | |
|
| | |
|
|
| Template Sequence | |
V | G | L | K | K | L | K | L | H | E | E | E | H | V | L | L | M | A | I | C | L | L | S | P | D | . |
. |
R | P | G | V | Q | D | H | V | R | I | E | A | L | Q | D | R | L | C | . |
. |
D | V | L | Q | A | Y | I | R | I | Q | H | P | G | G | R | L | L | Y | A | K | M | I |
| Template Known Secondary structure | |
| | | | T | T |
|
|
| | | | | | | | | | | | | T |
| S |
| . | . | S | T | T |
| S |
| | | | | | | | | | | | | . | . | | | | | | | | | | |
| T | T |
| T | T | | | | | | |
| Template Predicted Secondary structure | |
| | | | |
|
|
|
| | | | | | | | | | | | | |
|
|
| . | . |
|
|
|
|
|
| | | | | | | | | | | | | . | . | | | | | | | | | | |
|
|
|
| | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
346 | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | |
|
. | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | |
|
. | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
