Job Description P76507 Confidence 3.37% Date Thu Jan 5 12:23:44 GMT 2012 Rank 52 Aligned Residues 111 % Identity 10% Template c1xdkF_ PDB info PDB header:hormone/growth factor receptor Chain: F: PDB Molecule:retinoic acid receptor, beta; PDBTitle: crystal structure of the rarbeta/rxralpha ligand binding2 domain heterodimer in complex with 9-cis retinoic acid and3 a fragment of the trap220 coactivator Resolution 2.90 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250										.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.											.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.											.
Query Sequence		D	R	H	K	L	I	I	K	S	V	I	C	V	V	C	L	L	A	S	I	F	A	I	S	Y	S	K	G	V	V	E	L	N	K	Y	H	A	T	Y	F	G	S	Y	L	Y	M	K	N	N	.	.	.	.	.	.	.	.	.	G	Y	K	M	P	S	Y	V	D	D	.	K	C	V	G	L	D	A	W	G	N	K
Query Conservation																																																			.	.	.	.	.	.	.	.	.											.
Alig confidence																																																			.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		A	D	Q	I	T	L	L	K	A	A	C	L	D	I	L	I	L	R	I	C	T	R	Y	T	P	E	Q	D	T	M	T	F	S	D	G	L	T	L	N	R	T	Q	M	H	N	A	G	F	G	P	L	T	D	L	V	F	T	F	A	N	Q	L	L	P	L	E	M	D	D	T	E	T	G	L	L	S	A	I	C	L
Template Known Secondary structure																						T	T			T	T	T	T					T	T		B										T	T	T	G	G	G												G	G	G
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		F	D	I	S	F	G	A	T	P	T	E	V	G	T	E	C	F	E	S	H	K	D	E	T	F	S	N	A	L	F	L	L	V	S	K	P	S	.	.	.	T	I	F	K	L	P
Query Conservation																																							.	.	.
Alig confidence						.	.																																.	.	.
Template Conservation						.	.
Template Sequence		I	C	G	D	.	.	R	Q	D	L	E	E	P	T	K	V	D	K	L	Q	E	P	L	L	E	A	L	K	I	Y	I	R	K	R	R	P	S	K	P	H	M	F	P	K	I	L
Template Known Secondary structure		S		S		.	.	S	S	S		S	S								T																T	T		T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		328	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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