Job Description P08622 Confidence 29.33% Date Thu Jan 5 11:01:33 GMT 2012 Rank 89 Aligned Residues 46 % Identity 20% Template c3u2bC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna Resolution 2.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	Y	K	R	L	A	M	K	Y	H	P	D	R	N	Q	G	D	K	E	A	E	A	K	F	K	E	I	K	E	A	Y	E	V	L	T	D	S	Q	K	R	A	A	Y	D	Q	Y	G	H	A
Query Conservation
Alig confidence																			.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		S	Q	I	E	R	R	K	I	M	E	Q	S	P	D	M	H	N	.	.	.	.	.	A	E	I	S	K	R	L	G	K	R	W	K	L	L	K	D	S	D	K	I	P	F	I	Q	E	A	E	R	L
Template Known Secondary structure											T	T	S	T	T	S			.	.	.	.	.														S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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