 |
Job Description | P08622 | Confidence | 24.55% | Date | Thu Jan 5 11:01:33 GMT 2012 |
Rank | 112 | Aligned Residues | 41 |
% Identity | 15% | Template | c2da3A_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding protein; |
PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1)
|
Resolution | UNK |
|
  |   |
331 | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | |
|
|
. | . | . | . | . | . | 370 | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|  | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | L | N | E | R | Q | K | Q | L | L | Q | E | L | Q | E | S | F | G | G | P | T | G | E | H | N | S | P | R | S | K | S | F | . |
. |
. |
F | D | G | V | K | K | F | F |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |
|
|
Template Sequence |   |
T | T | I | T | P | E | Q | L | E | I | L | Y | Q | K | Y | L | L | D | S | N | P | T | R | K | M | L | D | H | I | A | H | E | V | G | L | K | K | R | V | V | Q | V | W | F |
Template Known Secondary structure |   |
S | S |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|