Job Description P17169 Confidence 99.94% Date Thu Jan 5 11:36:02 GMT 2012 Rank 30 Aligned Residues 199 % Identity 24% Template c3mdnD_ PDB info PDB header:transferase Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein; PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi Resolution 2.09 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		C	G	I	V	G	A	I	A	Q	R	D	V	A	E	I	L	L	E	G	L	R	R	L	E	Y	R	G	Y	D	S	A	G	L	A	V	V	D	A	E	G	H	M	T	R	L	R	R	L	G	K	V	.	Q	M	L	A	Q	A	A	E	E	H	P	L	H	G	G	T	G	I	A	H	T	R	W	A	T	H	G	E
Query Conservation																																																					.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Sequence		C	R	W	A	A	Y	H	G	T	P	I	F	L	E	D	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	V	A	W	Y	D	A	R	P	E	P	G	L	Y	R	D	V	Y	P	A	W	S	D	P	N	L	R	A	V	A	H	H	V	R	S	G	L	F	L	S	H	V	N	.	.	.	.	.	.
Template Known Secondary structure														G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S	S	S							S	S		T	T	T																						.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.														.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		P	S	E	V	N	A	H	P	H	V	S	E	H	I	V	V	V	H	N	G	I	I	E	N	H	E	P	L	R	E	E	L	K	A	R	G	.	.	.	.	.	Y	T	F	V	S	E	T	D	T	E	V	I	A	H	L	V	N	W	E	L	K	Q	G	G	T	L	R	E	A	V	L	R	A	I	P	Q	L	R	G
Query Conservation																																						.	.	.	.	.
Alig confidence		.	.	.	.																																	.	.	.	.	.																						.
Template Conservation		.	.	.	.																																																											.
Template Sequence		.	.	.	.	N	C	H	P	F	A	A	R	R	W	C	F	X	H	N	G	Q	V	G	G	F	E	A	F	R	K	Q	A	D	X	A	I	A	D	E	F	Y	T	Y	R	K	G	S	T	D	S	E	V	L	F	L	L	A	L	S	E	G	L	.	E	H	D	P	H	G	A	L	A	R	A	I	A	R	L	E	G
Template Known Secondary structure		.	.	.	.			S					T	T										T	T	G	G	G	G							T	S						T	T			S														T	T	T	.	T	T
Template Predicted Secondary structure		.	.	.	.																																																											.
Template SS confidence
						98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
													156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	A	Y	G	T	V	I	M	D	S	R	H	P	D	T	L	L	A	A	R	S	G	S	P	.	.	.	.	.	.	.	L	V	I	G	L	G	M	G	E	N	F	I	A	S	D	Q	L	A	L	L	P	V	T	R	R	F	I	F	L	E	E	G	D	I	A	E	I	T	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.										.	.	.												.	.	.	.	.	.	.																	.	.
Template Conservation																						.	.	.																																			.	.
Template Sequence		L	S	R	A	H	G	T	T	P	H	X	R	L	S	A	A	F	S	D	G	.	.	.	Q	T	L	Y	A	A	R	Y	S	S	D	H	I	A	P	S	V	Y	Y	R	Y	S	H	A	R	Q	G	W	A	V	V	S	E	P	.	.	L	E	T	D	E	G	D	W	T	E	L	R	P	G	R	X	L	T	I	G	A
Template Known Secondary structure							S		S	S	S										S	.	.	.	S									S	S	S											T	T	T	T						S	S		.	.				S	S								T	T							T
Template Predicted Secondary structure																						.	.	.																																			.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	N	I	F	D	K	T	G	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	A	A	E	R	D	F	A	P	A	D
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions