Job Description P17169 Confidence 85.13% Date Thu Jan 5 11:36:02 GMT 2012 Rank 76 Aligned Residues 128 % Identity 13% Template c3iz6A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																.	.	.																														.														.
Query SS confidence																.	.	.																														.														.
Query Sequence		S	E	L	G	P	N	A	D	E	L	L	S	K	V	.	.	.	E	H	I	Q	I	L	A	C	G	T	S	Y	N	S	G	M	V	S	R	Y	W	F	E	S	L	A	G	I	P	.	C	D	V	E	I	A	S	E	F	R	Y	R	K	.	S	A	V	R	R	N	S	L	M	I	T	L	S	Q	S	G	E	T	A
Query Conservation																.	.	.																														.														.
Alig confidence																.	.	.							.	.																						.														.																			.
Template Conservation																									.	.																																																							.
Template Sequence		W	E	K	L	Q	L	A	A	R	V	I	V	A	I	E	N	P	Q	D	I	I	V	Q	.	.	S	A	R	P	Y	G	Q	R	A	V	L	K	F	A	Q	Y	T	G	A	H	A	I	A	G	R	H	T	P	G	T	F	T	N	Q	L	Q	T	S	F	S	E	P	R	L	L	I	L	T	D	P	R	T	D	H	.
Template Known Secondary structure															T	T	S	S							.	.			S															T						S				T	T	T	T	T	T	T	T	T	S		S	S			S					S		T	T	T	T		.
Template Predicted Secondary structure																									.	.																																																							.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	L	A	G	L	R	L	S	K	E	L	G	Y	L	G	S	L	A	I	C	N	V	P	G	S	S	L	V	R	E	S	D	L	A	L	M	T	N	A	G	T	E	I	G	V	A	S	T	K	A	F	T	T	Q	L	T	V	L	L	M	L	V	A	K	L	S	R	L	K	G
Query Conservation
Alig confidence		.	.	.											.														.	.										.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.											.														.	.										.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	Q	P	I	K	E	S	A	L	G	N	.	I	P	T	I	A	F	C	D	T	D	S	P	M	.	.	R	Y	V	D	I	G	I	P	A	.	.	.	.	.	.	.	.	.	N	N	K	G	K	Q	S	I	G	C	L	F	W	L	L	A	R	M	V	L	Q	M	R	G
Template Known Secondary structure		.	.	.										T	.									T	T	S		G	.	.	G	G		S					S	.	.	.	.	.	.	.	.	.			S	S	T																	T	T	S
Template Predicted Secondary structure		.	.	.											.														.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
					136	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions