Job Description P17169 Confidence 36.17% Date Thu Jan 5 11:36:02 GMT 2012 Rank 198 Aligned Residues 142 % Identity 15% Template c1s1hB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

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		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	Q	M	L	S	Q	D	K	R	I	E	A	L	A	E	D	F	S	D	K	H	H	A	L	F	L	G	R	G	D	Q	Y	P	I	A	L	E	G	A	L	K	L	K	E	I	S	Y	I	H	A	E	A	Y	A	A	G	E	L	K	H	G	P	L	A	L	I	D	A	D	M	P	V	I	V	V	A	P	N	N
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		V	G	K	T	W	E	K	L	V	L	A	A	R	I	I	A	A	I	P	N	P	E	D	V	V	A	I	S	S	R	T	F	G	Q	R	A	V	L	K	F	A	A	H	T	G	A	T	P	I	A	.	G	R	F	T	P	G	S	F	T	N	Y	I	T	R	S	F	K	E	P	R	L	V	I	V	T	D	P	R	S
Template Known Secondary structure																			T	T	T	T									S													T	S	S						.	S				T	T	T	T	T	T	T	T	T	S		S				S					S		T	T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	E	K	L	K	S	N	I	E	E	V	R	A	R	G	G	Q	L	Y	V	F	A	D	Q	D	A	G	F	V	S	S	D	N	M	H	I	I	E	M	P	H	V	E	E	V	I	A	P	I	F	Y	T	V	P	L	Q	L	L	A	Y	H	V	A	L	I	K	G	T	D	V	D	Q
Query Conservation
Alig confidence			.	.	.	.	.																													.	.	.	.																	.	.
Template Conservation			.	.	.	.	.																													.	.	.	.																	.	.
Template Sequence		D	.	.	.	.	.	A	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	T	D	L	D	S	P	S	E	F	V	D	.	.	.	.	V	A	I	P	C	N	N	R	G	K	H	S	I	G	L	I	.	.	W	Y	L	L	A	R	E	V	L	R	L	R	G	A	L	V	D	R
Template Known Secondary structure		T	.	.	.	.	.											T									T	T	S		G	G	G		S	.	.	.	.					S		S	S									.	.													T
Template Predicted Secondary structure			.	.	.	.	.																													.	.	.	.																	.	.
Template SS confidence
		128						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions