 |
Job Description | P17169 | Confidence | 69.98% | Date | Thu Jan 5 11:36:02 GMT 2012 |
Rank | 102 | Aligned Residues | 107 |
% Identity | 19% | Template | c1eu1A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:dimethyl sulfoxide reductase; |
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
|
Resolution | 1.30 Å |
|
 |
  |   |
356 | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | A | G | L | R | L | S | K | E | L | G | Y | L | G | S | L | A | I | C | N | V | P | G | S | S | L | V | R | E | S | D | L | A | L | M | T | N | A | G | T | E | I | G | V | A | S | T | K | A | F | T | T | Q | L | T | V | L | L | M | L | V | A | K | L | S | R | L | K | G | L | D | A | S | I | E | H | D | I | V |
Query Conservation |   |
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|   |   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |   |
|
|   |
|
|
|
|
|   |   |
|
|   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|
|   |   |
|   |
|   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|
|
|   |   |   |
|
|   |   |   |   |   |
|   |   |
|
|   |   |   |
|
Template Sequence |   |
A | Y | A | G | M | K | A | L | K | E | K | G | . |
. |
T | R | V | I | I | N | P | V | R | T | E | T | A | D | Y | F | G | A | D | V | V | S | P | R | P | Q | T | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | A | L | M | L | G | M | A | H | T | L | Y | S | E | D | L | H | D | K | D | F | L | E | N | C | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T | . | . |
|  |  |
|
|
| S | B |
|
|  |  |  |  |  |  | T |
|
|
|
|
|
|
| T | T |
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
| . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
203 | . | . | . | . | . | . | 210 | . | . | . | . | |
|
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
  |
  |   |
436 | . | . | . | 440 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 450 | . | |
. | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | G | L | Q | A | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | S | R | I | E | Q | M | L | S | Q | . |
D | K | R | I | E | A | L | A | E | D | F | S | D | K | H | H | A | L | F | L | G | R | G | D | Q |
Query Conservation |   |
  |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   | . |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |
|
|
|
|   |   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |
|   |   |
Template Sequence |   |
T | G | F | D | L | F | A | A | Y | L | T | G | E | S | D | G | T | P | K | T | A | E | W | A | A | E | I | C | G | L | P | A | E | Q | I | R | E | L | A | R | S | F | V | A | G | R | T | M | L | A | A | G | W | S | I | Q |
Template Known Secondary structure |   |
 |
|  |  |  |  |  |  |  |  | T | T | T | T | T | S |
|
|
|
|  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|  |  |  |  |  |
| S | G | G | G |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|