|   |
9 | 10 | . | . | . | . | . | . | . | |
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
| . | . | . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | V | P | A | N | G | S | E | F | . |
. |
. |
E | L | S | V | T | Q | V | P | D | E | Q | H | I | R | F | W | P | Q | H | F | G | T | I | P | Q | W | I | T | L | E | P | R | I | F | A | W | M | D | R | F | C | D | E | Y | C | G | G | I | W | S | F | Y | T | L | S | N | G | G | A | F | M | A | P | D | A | D | G | D |
Query Conservation |   |
  |   |   |   |   |   |   |   |   | . | . | . |   |
|
|
|
|   |
|
|
|   |   |
|
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |
|
|   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |
|   | . | . | . | . | . |
|
|
|   |
|   |   |
|
|
|
|
|   |
|
|
|
| . | . | . | . |   |
Template Sequence |   |
T | S | S | A | C | A | P | E | T | G | L | Q | Q | L | V | A | T | I | V | P | D | E | Q | R | I | S | F | W | P | Q | H | F | G | L | I | P | Q | W | V | T | L | E | P | R | V | F | G | W | M | D | R | L | C | . |
. |
. |
. |
. |
C | I | W | N | L | Y | T | L | N | N | G | G | A | F | M | A | P | . |
. |
. |
. |
E |
Template Known Secondary structure |   |
|
|
| S |
|
|
|
|
| S |
|
|
|
|
|  |  |  |
|
|  |  |  |  | T | T |  |  |  |  |  |  | T | T | S | T | T | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|  |  |  |  |  |  | T | T | S |
|  |  |  |  |  | . | . | . | . |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
| . | . | . | . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
|
. |
  |
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | K | W | H | L | L | N | G | M | N | G | N | G | A | E | M | S | A | E | A | A | G | I | A | V | C | L | I | E | Y | S | H | H | A | C | L | T | E | C | D | A | M | T | E | H | Y | Y | R | L | R | D | Y | A | L | Q | H | P | E | S | S | A | I | M | R | I | I | D |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|
|
|
|   |   |
|   |
|   |   |   |
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|
|
|
|   |   |
|   |
|
|
|
|
Template Sequence |   |
E | T | W | V | L | F | N | A | M | N | G | N | R | A | E | M | S | P | E | A | A | G | I | A | A | C | L | M | T | Y | S | H | H | A | C | R | T | E | C | Y | A | M | T | V | H | Y | Y | R | L | R | D | Y | A | L | Q | H | P | E | C | S | A | I | M | R | I | I | D |
Template Known Secondary structure |   |
|
|  |  |  |  |  | T | T | T | T |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
  |