Job Description P32138 Confidence 99.13% Date Thu Jan 5 11:49:24 GMT 2012 Rank 26 Aligned Residues 184 % Identity 17% Template d1r46a2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 3.25

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.																.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.									.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.									.
Query Sequence		G	R	Q	P	E	L	P	D	W	I	Y	D	G	V	T	L	G	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	E	V	C	Q	K	K	L	D	T	M	R	N	A	G	V	.	.	.	K	V	N	G	I	W	A	Q	.	D	W	S	G	I	R	M	T	S	F	G	K	R	V	M	W
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.									.
Alig confidence									.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.									.												.	.	.	.	.
Template Conservation									.	.	.	.	.																																																																.	.	.	.	.
Template Sequence		G	L	A	R	T	P	T	.	.	.	.	.	M	G	W	L	H	W	E	R	F	M	C	N	L	D	C	Q	E	E	P	D	S	C	I	S	E	K	L	F	M	E	M	A	E	L	M	V	S	E	G	W	K	D	A	G	Y	E	Y	L	C	I	D	D	C	W	M	A	P	Q	R	D	S	E	G	.	.	.	.	.
Template Known Secondary structure		S			S	S			.	.	.	.	.					S					T	T				T	T	T		T	T	T	S		S														T	T					T								S	S		B		S	S			T	T	S	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.																																																																.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		N	W	K	W	N	S	E	N	Y	P	Q	.	L	D	S	R	I	K	Q	W	N	Q	E	G	V	Q	F	L	A	Y	I	N	P	Y	V	A	S	D	K	D	L	C	E	E	A	A	Q	H	G	Y	L	A	K	D	A	S	G	G	D	Y	L	V	E	F	G	E	F	Y	G	G	V	V	D	L	T	N	P	E	A	Y
Query Conservation													.
Alig confidence													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	Q	A	D	P	Q	R	F	P	H	G	I	R	Q	L	A	N	Y	V	H	S	K	G	L	K	L	G	I	Y	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	K	T	C	A	G	F	P	G	S	F
Template Known Secondary structure					B		T	T	T		T	T												T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	B		T	T	S	S	B			T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																																				.	.	140	.	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		A	W	F	K	E	V	I	K	K	N	M	I	E	L	G	C	G	G	W	M	A	D	F	G	E	Y	L	P	T	D	T	Y	L	H	N	G	V	S	A	E	I	M	H	N	A	W	P	A	L	W	A	K	C	N	Y	E	A	L	E	E	T	G	K	L	G	E	I	L	F	F	M	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence									.															.	.	.	.	.	.	.	.	.	.															.	.	.	.	.											.	.	.								.	.	.	.	.	.	.	.	.
Template Conservation									.															.	.	.	.	.	.	.	.	.	.															.	.	.	.	.											.	.	.
Template Sequence		G	Y	Y	D	I	D	A	.	Q	T	F	A	D	W	G	V	D	L	L	K	F	D	.	.	.	.	.	.	.	.	.	.	G	C	Y	C	D	S	L	E	N	L	A	D	G	Y	.	.	.	.	.	K	H	M	S	L	A	L	N	R	T	.	.	.	G	R	S	I	V	Y	S	C	E	W	P	L	Y	M	W	P
Template Known Secondary structure		T	T						.							T								.	.	.	.	.	.	.	.	.	.			S		S	S									.	.	.	.	.											.	.	.		S													T	T
Template Predicted Secondary structure									.															.	.	.	.	.	.	.	.	.	.															.	.	.	.	.											.	.	.
Template SS confidence
		150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170											.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
				455	.	.	.	.	460	.	.	.	.	.	.	.	.	.			470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure		.	.																.	.
Query SS confidence		.	.																.	.
Query Sequence		.	.	R	A	G	S	T	G	S	Q	K	Y	S	T	M	M	W	.	.	A	G	D	Q	N	V	D	W	S	L	D	D	G	L	A	S	V	V	P	A	A	L	S	L	A	M
Query Conservation		.	.																.	.
Alig confidence		.	.														.		.	.											.	.	.
Template Conservation																	.														.	.	.
Template Sequence		F	Q	K	P	N	Y	T	E	I	R	Q	Y	C	N	H	.	W	R	N	F	A	D	I	D	D	S	W	K	S	.	.	.	I	K	S	I	L	D	W	T	S	F	N	Q	E
Template Known Secondary structure		T	S								T	T	T		S		.				S					S	S				.	.	.										T	T	T	T
Template Predicted Secondary structure																	.														.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions