Job Description P32138 Confidence 99.17% Date Thu Jan 5 11:49:24 GMT 2012 Rank 24 Aligned Residues 296 % Identity 13% Template c3dhuC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum Resolution 2.00 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	L	D	S	R	I	K	Q	W	N	Q	E	G	V	Q	F	L	A	Y	I	N	P	.	Y	V	A	S	D	K	D	L	C	E	E	A	A	Q	H	G	Y	L	A	K	D	A	S	G	G	D	Y	L	V	E	F	G	E	F	Y	G	G	V	V	D	L	T	N	P	E	A	Y	A	W	F	K	E	V	I	K	K	N
Query Conservation																								.
Alig confidence																								.												.	.
Template Conservation																																				.	.
Template Sequence		D	F	K	A	L	T	D	R	A	H	E	L	G	M	K	V	M	L	D	I	V	Y	N	H	T	S	P	D	S	V	L	A	T	E	.	.	H	P	E	W	F	Y	H	D	A	D	G	Q	L	T	N	K	V	G	D	W	S	D	V	K	D	L	D	Y	G	H	H	E	L	W	Q	Y	Q	I	D	T	L	L	Y	W
Template Known Secondary structure													T	T										S				T	T	S						.	.		G	G	G	B		B		T	T	S		B			S		T	T		T	T				B		T	T		T
Template Predicted Secondary structure																																				.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	E	L	G	C	G	G	W	M	A	D	F	G	E	Y	L	P	T	D	T	Y	L	H	N	G	V	S	A	E	I	M	H	N	A	W	P	A	L	W	A	K	C	N	Y	E	A	L	E	E	T	G	K	L	G	E	I	L	F	F	M	R	A	G	S	T	G	S	Q	K	Y	S	T	M	M	W	A	G	D	Q
Query Conservation
Alig confidence				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																		.
Template Conservation				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																		.
Template Sequence		S	Q	.	.	F	V	D	G	Y	R	C	D	V	A	P	L	V	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	W	L	E	A	R	K	Q	V	N	A	K	Y	P	E	T	.	.	L	W	L	A	E	S	A	G	S	G	F	I	E	E	L	R	S	.	Q	G	Y	T	G
Template Known Secondary structure		T	T	.	.	T		S					T	T	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T		.	.																		.	T	T
Template Predicted Secondary structure				.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																		.
Template SS confidence
		162	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																				180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.
		474	.	.	.	.	.	480	.	.	.																						.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	V	D	W	S	L	D	D	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	V	V	P	A	A	L	S	L	A	M	T	G	H	G	L	H	H	S	D	I	G	G	Y	T	T	L	F	E	M	K	R	S	K	E	L	L	L	R	W	C	D	F	S	A	F	T	P
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																																																								.
Template Sequence		L	S	D	S	E	L	Y	Q	A	F	D	M	T	Y	D	Y	D	V	F	G	D	F	K	D	Y	W	Q	G	R	S	T	V	E	R	Y	V	D	L	L	Q	R	Q	D	A	T	F	P	G	N	Y	V	K	M	R	.	F	L	E	N	H	D	N	A	R	M	M	S	L	M	H	S	K	A	E	A	V	N	N	L	T
Template Known Secondary structure								T	T	T		S				G	G	G	T									T	T	S	S																S		T	T						.		S			T	T	S									S
Template Predicted Secondary structure																																																								.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		533	.	.	.	.	.	.																		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	M	R	T	H	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	P	G	D	N	W	Q	F	D	G	D	A	E	T	I	A	H	F	A	R	M	T	T	V	F	T	T	L	K	P	Y	L	K	E	A	V	A	L	N	A	K	S	G	L	P	V	M	R	P	L	F	L	H	Y	E
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		W	I	F	M	Q	R	G	I	P	L	I	Y	N	G	Q	E	F	L	A	E	H	Q	P	S	L	F	D	R	D	T	M	V	A	D	R	H	G	D	V	T	P	L	I	Q	K	L	V	T	I	K	Q	.	.	.	.	.	.	.	.	.	.	L	P	L	L	R	A	A	D	Y	Q	L	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	S	S						T	T	G	G	G	T			S				S	S	S					T	T																		T	.	.	.	.	.	.	.	.	.	.	S	G	G	G	G		S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.											.	.	350	.	.	.	.	.	.	.	.
		596	.	.	.	600	.	.	.	.	.	.	.	.	.						610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.			.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure																.	.	.	.	.																																		.	.
Query SS confidence																.	.	.	.	.																																		.	.
Query Sequence		D	D	A	H	T	Y	T	L	K	Y	Q	Y	L	L	.	.	.	.	.	G	R	D	I	L	V	A	P	V	H	E	E	G	R	S	D	W	T	L	Y	L	P	E	D	N	W	V	H	A	W	T	G	E	.	.	A	F	R	G	G	E	V	T	V	N	A	P	I	G	K	P	P	V	F	Y	R
Query Conservation																.	.	.	.	.																																		.	.
Alig confidence		.	.	.	.											.	.	.	.	.																																		.	.												.	.	.	.
Template Conservation		.	.	.	.																																																														.	.	.	.
Template Sequence		.	.	.	.	A	V	V	E	E	G	I	V	K	I	T	Y	R	A	A	G	E	A	L	T	A	W	I	P	L	K	G	Q	V	T	A	V	A	T	K	L	A	A	G	S	Y	Q	N	L	L	T	D	G	P	T	E	V	V	D	G	K	L	T	V	D	G	.	.	.	.	Q	P	V	L	I	K
Template Known Secondary structure		.	.	.	.				G	G	G									T	T									T	T												S						T	T	T	T							T	T						S	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.																																																														.	.	.	.
Template SS confidence
						359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.					420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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