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Job DescriptionP32138
Confidence97.04%DateThu Jan 5 11:49:24 GMT 2012
Rank110Aligned Residues146
% Identity15%Templatec1ud8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290.........300...... ...310.... .....320.........330...
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Query Sequence  EVCQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRVMWNW. . . . . . . . . KWNSENYP. . . QLDSRIKQWNQEGVQFLAY
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Template Sequence  NRLHDDAAALSDAGIT. . AIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGD
Template Known Secondary structure  T

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SSSTT

SSSTT
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S
BTTBSS
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TT
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   23......30........ .40.........50.........60.........70.........80.........90.........100
 
   334... ..340.........350.........360.........370
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Query Sequence  INPY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VASDKDLCEEAAQHGYLAKDASGGDYLVEFGEF
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Template Sequence  VVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANT
Template Known Secondary structure 

S


STT
S

B

GGGTTSS



B
GGGTTTTTT
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   371... .....380.........390.........400.........410...
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Query Sequence  YGGV. . . . . . . . . . . . . . . . VDLTNPEAYAWFKEVIKKNMIELGCGGWMADFGEYLPTD
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Template Sequence  NWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFW
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SS


TTS




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   181........190.........200.........210.........220.........230.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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