Job Description P32138 Confidence 99.05% Date Thu Jan 5 11:49:24 GMT 2012 Rank 27 Aligned Residues 242 % Identity 13% Template c1t0oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose Resolution 1.96 Å

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.																	.	.	.
Query SS confidence																						.	.	.	.	.																	.	.	.
Query Sequence		G	R	Q	P	E	L	P	D	W	I	Y	D	G	V	T	L	G	I	Q	G	.	.	.	.	.	G	T	E	V	C	Q	K	K	L	D	T	M	R	N	A	G	.	.	.	V	K	V	N	G	I	W	A	Q	D	W	S	G	I	R	M	T	S	F	G	K	R	V	M	W	N	W	K	W	N	S	E	N	Y	P	Q
Query Conservation																						.	.	.	.	.																	.	.	.
Alig confidence									.	.	.	.	.									.	.	.	.	.																	.	.	.													.	.	.	.
Template Conservation									.	.	.	.	.																																													.	.	.	.
Template Sequence		V	T	G	K	V	P	S	.	.	.	.	.	L	G	W	N	S	W	N	A	Y	H	C	D	I	D	E	S	K	F	L	S	A	A	E	L	I	V	S	S	G	L	L	D	A	G	Y	N	Y	V	N	I	D	D	C	W	.	.	.	.	S	M	K	D	G	R	V	D	G	H	I	A	P	N	A	T	R	F	P	D
Template Known Secondary structure		S	T	T	T	S			.	.	.	.	.					S					T	T																	T	T					T								S	S		.	.	.	.	B		T	T			B	T	T	B			B		T	T	T		T	T
Template Predicted Secondary structure									.	.	.	.	.																																													.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
			316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	D	S	R	I	K	Q	W	N	Q	E	G	V	Q	F	L	A	Y	I	N	P	Y	V	A	S	D	K	D	L	C	E	E	A	A	Q	H	G	Y	L	A	K	D	A	S	G	G	D	Y	L	V	E	F	G	E	F	Y	G	G	V	V	D	L	T	N	P	E	A	Y	A	W	F	K	E	V	I	K	K	N	M
Query Conservation		.
Alig confidence		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		G	I	D	G	L	A	K	K	V	H	A	L	G	L	K	L	G	I	Y	S	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	T	C	A	G	Y	P	A	S	L	G	Y	E	D	V	D	A	.	.	.	.	.	.	A	D	F
Template Known Secondary structure													T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B		T	T	S		B			T	T							.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100																															.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.							.	120	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.																					.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	L	G	C	G	G	W	M	A	D	F	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	P	T	D	T	Y	L	H	N	G	V	S	A	E	I	M	H	N	A	W	P	A	L	W	A	K	C	N	Y	E	A	L	E	E	T	G	K	L	G	E	I	L	F	F	M
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	W	G	V	D	Y	L	K	Y	D	N	C	N	V	P	S	D	W	Q	D	E	Y	V	A	C	N	P	D	F	V	K	T	G	P	N	G	T	C	T	T	A	L	D	P	T	L	A	P	P	G	Y	D	W	S	T	S	K	S	A	E	R	F	G	A	M	R	N	A	L	A	K	Q	S	H	E	I	V	L	S
Template Known Secondary structure					T													G	G	G	S		S	S	B				T	T	T	S				G	G	G				T	T	T		T	T	B			T	T			G	G	G	S															T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		455	.	.	.	.	460	.	.							.	.	.	.	.	.	.			470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.								.	.
Query SS confidence										.	.	.	.	.	.								.	.
Query Sequence		R	A	G	S	T	G	S	Q	.	.	.	.	.	.	K	Y	S	T	M	M	W	.	.	A	G	D	Q	N	V	D	W	S	L	D	D	G	L	A	S	V	V	P	A	A	L	S	L	A	M	T	G	H	G	L	H	H	S	D	I	G	G	Y	T	T	L	F	E	M	K	R	S	K	E	L	L	L	R	W	C	D
Query Conservation										.	.	.	.	.	.								.	.
Alig confidence										.	.	.	.	.	.						.		.	.											.	.	.
Template Conservation																					.														.	.	.
Template Sequence		M	C	I	W	G	Q	A	D	V	F	S	W	G	N	S	T	G	I	S	.	W	R	M	S	D	D	I	S	P	N	W	G	S	.	.	.	V	T	R	I	L	N	L	N	S	F	K	L	N	S	V	D	F	W	G	H	N	D	A	D	M	L	E	V	G	N	G	N	L	T	A	A	E	T	R	T	H	F	A	L
Template Known Secondary structure					T	T		T	T					G	G	G	T		S		.				S	S				S	S				.	.	.										T		G	G	G		B	T	T	B									T	T		T	T
Template Predicted Secondary structure																					.														.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		527	.	.	530	.		.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		F	S	A	F	T	.	P	M	M
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		W	A	A	M	K	S	P	L	L
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions