 |
Job Description | P0A7B3 | Confidence | 72.42% | Date | Thu Jan 5 11:05:16 GMT 2012 |
Rank | 152 | Aligned Residues | 98 |
% Identity | 15% | Template | c3nbmA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:pts system, lactose-specific iibc components; |
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
|
Resolution | 1.30 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | I | G | I | V | G | H | P | R | H | P | T | A | L | T | T | H | E | M | L | Y | R | W | L | C | T | K | G | Y | E | V | I | V | E | Q | Q | I | A | H | E | L | Q | L | K | N | V | K | T | G | T | L | A | E | I | G | Q | L | A | D | L | A | V | V | V | G | G | D | G | N | M | L | G | A | A | R | T | L | A | R | Y |
Query Conservation |   |
  |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|   |   |
|   | . |
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
K | V | L | V | L | C | A | G | S | G | . |
T | S | A | Q | L | A | N | A | I | N | E | G | A | N | L | T | E | V | R | V | I | A | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | G | A | Y | G | A | H | Y | D | I | X | G | V | Y | D | L | I | I | L | A | P | Q | V | R | S | Y | Y | R | E | X | K | V | D | A | E | R |
Template Known Secondary structure |   |
 |  |  |  |  |  | S | S | S | S | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  | T | T | S |
| T | T | T | G | G | G |
| S |  |  |  |  |
| G | G | G | G | G | G |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
457 | . | . | 460 | . | . | . | . | . | . | |
. | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . |
  |
  |   |
|
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
D | I | K | V | I | G | I | N | R | G | N | L | G | F | L | T | D | L | D | P | D | N | A | Q | Q | Q | L | A | D | V | L | E | G |
Query Conservation |   |
. |   |   |
|
|
|
|
|
|   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |   |
|   |   |   |   |
|   |   |   | . | . | . | . |
|   |
|
|
|
|   |
|   |   |   |   |   |   |
Template Sequence |   |
L | G | I | Q | I | V | A | T | R | G | X | E | Y | I | H | L | . |
. |
. |
. |
T | K | S | P | S | K | A | L | Q | F | V | L | E | H |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |
|
|  |  |  |  |  |  |  | . | . | . | . |  | T |
|  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
526 | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | |
|
|
|
. | . | . | . | . | . | . | . | 550 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|