Job Description P0A7B3 Confidence 100.00% Date Thu Jan 5 11:05:16 GMT 2012 Rank 1 Aligned Residues 288 % Identity 27% Template c3afoB_ PDB info PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.														.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	H	F	K	C	I	G	I	V	G	H	P	R	H	P	T	A	L	T	T	H	E	M	L	Y	R	W	L	C	T	K	.	.	G	Y	E	V	I	V	E	Q	Q	I	A	H	E	L	Q	L	K	N	V	K	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	E	I	G	Q	L	A	D	L
Query Conservation																																		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	P	L	Q	N	V	Y	I	T	K	K	P	W	T	P	S	T	R	E	A	M	V	E	F	I	T	H	L	H	E	S	Y	P	E	V	N	V	I	V	Q	P	D	V	A	E	E	I	S	Q	D	F	K	S	P	L	E	N	D	P	N	R	P	H	I	L	Y	T	G	P	E	Q	D	I	V	N	R	T	D	L
Template Known Secondary structure		S	S											T	T																				T	T														G	G	G			S		G	G	G		T	T	S																	S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.
Predicted Secondary structure																								.																																																			.
Query SS confidence																								.																																																			.
Query Sequence		A	V	V	V	G	G	D	G	N	M	L	G	A	A	R	T	L	A	R	Y	D	I	.	K	V	I	G	I	N	R	G	N	L	G	F	L	T	D	L	D	P	D	N	A	Q	Q	Q	L	A	D	V	L	E	G	H	Y	I	S	E	K	R	F	L	L	E	A	Q	V	C	Q	Q	D	C	.	Q	K	R	I	S	T
Query Conservation																								.																																																			.
Alig confidence																								.																																																			.
Template Conservation
Template Sequence		L	V	T	L	G	G	D	G	T	I	L	H	G	V	S	M	F	G	N	T	Q	V	P	P	V	L	A	F	A	L	G	T	L	G	F	L	S	P	F	D	F	K	E	H	K	K	V	F	Q	E	V	I	S	S	R	A	K	C	L	H	R	T	R	L	E	C	H	L	K	K	K	D	S	N	S	S	I	V	T	H
Template Known Secondary structure							S											T	T	T	S											S	S			S	S					G	G	G										T	T																	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	N	E	V	V	L	H	P	G	K	V	A	H	M	I	E	F	E	V	Y	I	D	E	I	F	A	F	S	Q	R	S	D	G	L	I	I	S	T	P	T	G	S	T	A	Y	S	L	S	A	G	G	P	I	L	T	P	S	L	D	A	I	T	L	V	P	M	F	P	H	T	L	S	A	R	P	L	V	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	N	D	I	F	L	H	R	G	N	S	P	H	L	T	N	L	D	I	F	I	D	G	E	F	L	T	R	T	T	A	D	G	V	A	L	A	T	P	T	G	S	T	A	Y	S	L	S	A	G	G	S	I	V	S	P	L	V	P	A	I	L	M	T	P	I	C	P	R	S	L	S	F	R	P	L	I	L	P
Template Known Secondary structure			S	S							T	T		S	S									T	T																T	G	G	G	G	T					T	T						T	T	S											S		S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		S	S	S	T	I	R	L	R	F	S	H	R	R	N	D	L	E	I	S	C	D	S	Q	I	A	L	P	I	Q	E	G	E	D	V	L	I	R	R	C	D	Y	H	L	N	L	I	.	.	H	P	K	D	Y	S	Y	F	N	T	L	S	T	K	L	G	W	S	K	K	L
Query Conservation																																																.	.
Alig confidence											.	.																																				.	.
Template Conservation											.	.
Template Sequence		H	S	S	H	I	R	I	K	I	.	.	G	S	S	V	V	K	L	S	V	D	G	I	P	Q	Q	D	L	D	V	G	D	E	I	Y	V	I	N	E	V	K	R	S	G	I	Y	C	V	A	K	T	E	N	D	W	I	R	G	I	N	E	L	L	G	F	N	S	S	F
Template Known Secondary structure		T	T								.	.										T	T								T	T													S						S	S	T	T									T	T		T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions