Job Description P32720 Confidence 14.48% Date Thu Jan 5 11:50:43 GMT 2012 Rank 9 Aligned Residues 184 % Identity 14% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	S	E	A	S	E	K	K	P	F	N	F	A	L	F	W	D	K	Y	G	T	F	F	I	L	A	I	I	V	A	I	F	G	S	L	S	P	E	Y	F	L	T	T	N	N	I	T	Q	I	F	V	Q	S	S	V	T	V	L	I	G	M	G	E	F	F	A	I	L	V	A	G	I	D	L	S	V	G	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	A	Q	R	A	Q	P	I	E	S	D	A	T	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K	A	S	I	V	D	M	A	N
Template Known Secondary structure							T	S																													T	T	S		G	G	G																											T	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.														.	.	.
Query SS confidence																																					.	.	.	.														.	.	.
Query Sequence		L	A	L	S	G	M	V	T	A	K	L	M	L	A	G	V	D	P	F	L	A	A	M	I	G	G	V	L	V	G	G	A	L	G	A	.	.	.	.	I	N	G	C	L	V	N	W	T	G	L	H	P	.	.	.	F	I	I	T	L	G	T	N	A	I	F	R	G	I	T	L	V	I	S	D	A	N	S	V	Y
Query Conservation																																					.	.	.	.														.	.	.
Alig confidence																	.																				.	.	.	.														.	.	.																							.	.	.
Template Conservation																	.																																																														.	.	.
Template Sequence		A	A	L	A	G	G	V	A	I	G	S	V	C	N	I	.	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G	.	.	.
Template Known Secondary structure			T	T							T	T	T	T	T	T	.	S																						T									S					T	T						T	T														S	T	T	.	.	.
Template Predicted Secondary structure																	.																																																														.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	S	F	D	F	V	N	F	F	A	A	S	V	I	G	I	P	V	P	V	I	F	S	L	I	V	A	L	I	L	W	F	L	T	T	R	M	R	L	G	R	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.																													T	T				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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