Job Description P32720 Confidence 76.94% Date Thu Jan 5 11:50:43 GMT 2012 Rank 3 Aligned Residues 207 % Identity 13% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	E	A	S	E	K	K	P	F	N	F	A	L	F	W	D	K	Y	G	T	F	F	I	L	A	I	I	V	A	I	F	G	S	L	S	P	E	Y	F	L	T	T	N	N	I	T	Q	I	F	V	Q	S	S	V	T	V	L	I	G	M	G	E	F	F	A	I	L	V	A	G	I	D	L	S	V	G	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G
Template Known Secondary structure				T	T	T	T	T	S					S																						G	G	G	S	S	S	S																													S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																			.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.
Query Sequence		A	L	S	G	M	V	T	A	K	L	M	L	A	G	V	D	P	F	L	A	A	M	I	G	G	V	L	V	G	G	A	L	G	A	I	N	G	C	L	V	N	W	T	G	L	H	P	F	I	I	T	L	G	T	N	A	I	F	R	G	I	T	L	V	I	.	.	.	.	.	.	S	D	A	N	S	V	Y	G	F
Query Conservation																																																																			.	.	.	.	.	.
Alig confidence																.																								.																											.	.	.	.	.	.
Template Conservation																.																								.
Template Sequence		A	I	A	G	L	A	A	I	T	P	A	A	G	F	.	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	.	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L
Template Known Secondary structure										T	T	T	T	T	T	.																								.				T	T				T	T																											S				G
Template Predicted Secondary structure																.																								.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	D	F	V	N	F	F	A	A	S	V	I	G	I	P	V	P	V	I	F	S	L	I	V	A	L	I	L	W	F	L	T	T	R	M	R	L	G	R	N	I	Y	A	L	G	G	N	K	N	S	A	F	Y	S	G	I	D	V	K	F	H
Query Conservation
Alig confidence																																							.	.	.												.	.	.	.
Template Conservation																																							.	.	.												.	.	.	.
Template Sequence		L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V	.	.	.	.	G	L	D	L	S	Q	H
Template Known Secondary structure		G	G	T																																		T	.	.	.		S	B									.	.	.	.
Template Predicted Secondary structure																																							.	.	.												.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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