Job Description P03007 Confidence 98.81% Date Thu Jan 5 10:57:50 GMT 2012 Rank 36 Aligned Residues 123 % Identity 14% Template c4ktqA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna Resolution 2.50 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	R	G
Query Conservation
Alig confidence													.	.	.	.	.														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	A	P	W	P	P	P	E	G	.	.	.	.	.	A	F	V	G	F	V	L	S	R	K	E	P	M	.	.	.	.	.	.	.	.	.	W	A	D	L	L	A	L	A	A	A	R	G	G	R	V	H	R	A	P	E	P	Y	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D
Template Known Secondary structure							S				S	S	.	.	.	.	.								S	S	S		T	T	.	.	.	.	.	.	.	.	.	T											T	T						S	S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure													.	.	.	.	.														.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.						.	.	.	.	.	310	.	.	.	.	.	.	.										.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.																.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	E	I	D	N	S	K	R	T	L	H	G	A	L	L	D	A	Q	I	L	A
Query Conservation
Alig confidence																		.	.	.										.	.	.	.	.	.															.																	.	.	.	.
Template Conservation																		.	.	.										.	.	.	.	.	.															.																	.	.	.	.
Template Sequence		L	K	E	A	R	G	L	L	A	K	D	L	S	V	L	A	.	.	.	L	R	E	G	L	G	L	P	P	.	.	.	.	.	.	G	D	D	P	M	L	L	A	Y	L	L	D	P	S	.	N	T	T	P	E	G	V	A	R	R	Y	G	G	E	W	T	.	.	.	.	E	E	A	G	E	R	A	A	L	S	E
Template Known Secondary structure			S	S	B		S	T	T									.	.	.			T	T					B	.	.	.	.	.	.													T	T	.												S					.	.	.	.	S		T	T	T	T
Template Predicted Secondary structure																		.	.	.										.	.	.	.	.	.															.																	.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.							370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.	.	.	.	.	.	.	.	410
		173	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	Y	L	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	F	A	N	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions