Job Description P03007 Confidence 54.49% Date Thu Jan 5 10:57:50 GMT 2012 Rank 58 Aligned Residues 140 % Identity 17% Template c3q7cA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nucleoprotein; PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	.	.	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F
Query Conservation																																																.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.															.	.	.	.							.	.																								.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.															.	.	.	.																																.	.
Template Sequence		T	W	M	D	I	E	G	R	P	E	D	P	.	.	.	.	.	.	.	.	.	.	V	E	I	A	L	Y	Q	P	S	S	G	C	Y	I	.	.	.	.	H	F	F	R	E	P	T	D	L	K	Q	F	K	Q	D	A	K	Y	S	H	G	I	D	V	T	D	L	F	A	T	Q	.	.	P	G	L	T	S	A	V
Template Known Secondary structure								S		T	T	S		.	.	.	.	.	.	.	.	.	.	S							T	T	T	T				.	.	.	.							S												T	T		B		G	G	G	G	T	T	B		.	.	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.															.	.	.	.																																.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.											.	.	400	.	.	.	.	.	.	.	.	.	410	.					.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																				.										.	.	.	.
Query SS confidence																																																																				.										.	.	.	.
Query Sequence		M	D	Y	I	R	G	A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	.	E	I	D	N	S	K	R	T	L	.	.	.	.
Query Conservation																																																																				.										.	.	.	.
Alig confidence																																							.	.	.	.	.	.																								.										.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		I	D	A	L	P	R	N	M	V	I	T	C	Q	G	S	D	D	I	R	K	L	L	E	S	Q	G	R	K	D	I	K	L	I	D	I	A	L	.	.	.	.	.	.	S	K	T	D	S	R	K	Y	E	N	A	V	W	D	Q	Y	K	D	L	C	H	M	H	T	G	V	V	V	E	K	K	K	R	G	G	K	E
Template Known Secondary structure					S		T	T						S	S											T	T		T	T	S								.	.	.	.	.	.						T	T	T									G	G	G				B		S							S	S	S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
						162	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	H	G	A	L	L	D	A	Q	I
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		E	I	T	P	H	C	A	L	M	D	C	I	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions