Job Description P03007 Confidence 95.80% Date Thu Jan 5 10:57:50 GMT 2012 Rank 55 Aligned Residues 80 % Identity 18% Template c3ikmD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																						.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	K	V	T	D	S	L	A	V	A	R	K	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	G	K	R	N	S	L	D	A	L	C	A	R
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		Q	L	V	V	G	H	N	V	S	F	D	R	A	H	I	R	E	Q	Y	L	I	Q	G	S	R	M	.	.	.	.	.	.	.	R	F	L	D	T	M	S	M	H	M	A	I	S	G	L	S	S	F	Q	R	S	L	W	I	A	A	K	Q	G	W	D	W	L	D	I	S	S	V	N	S	L	A	E	V	H	R	L
Template Known Secondary structure									S	T	T	S								T	T	T	T					.	.	.	.	.	.	.																												T										S	T	T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		152	.		.	.	.	.	.	.	160	.	.	.	.	.																					.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	.	I	D	N	S	K	R	T	L	H	G	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T
Query Conservation				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	G	G	P	P	L	E	K	E	P	R	E	L	F	V	K	G	T	M	K	D	I	R	E	N	F	Q	D	L	M	Q	Y	C	A	Q	D	V	W	A	T	H	E	V	F	Q	Q	Q	L
Template Known Secondary structure		T		S	S	T	T	T	S	S	S	S	S	S	G	G	G	S	S		S								T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions