Job Description P03007 Confidence 99.08% Date Thu Jan 5 10:57:50 GMT 2012 Rank 30 Aligned Residues 172 % Identity 17% Template c3iayA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	A	I	T	R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	F	H	V	Y	L	K	P	D	R	L	V	D	P	E	A	F	G	V	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence		S	H	T	A	P	L	R	I	M	S	F	D	I	E	C	A	G	R	I	G	V	F	P	E	P	E	Y	D	P	V	I	Q	I	A	N	V	V	S	I	A	G	A	K	K	P	F	I	R	N	V	F	T	L	N	T	C	S	P	I	T	G	S	M	I	F	S	H	A	T	E	E	E	M	.	.	.	.	.	.	L
Template Known Secondary structure		S																		T	T	S				T	T	T													T	T		S	S		S								S					B	T	T	B						S	S					.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.							.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.																															.	.	.	.
Predicted Secondary structure																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	A	D	E	F	M	D	Y	I	R	G	A	E	L	V	I	H	N	A	A	.	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	T	D
Query Conservation																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	W	R	N	F	I	I	K	V	D	P	D	V	I	I	G	Y	N	T	T	N	F	D	I	P	Y	L	L	N	R	A	K	A	L	K	V	N	D	F	P	Y	F	G	R	L	K	T	V	K	Q	E	I	K	E	S	V	F	S	S	K	A	Y	G	T	R	E	T	K	N	V	N	I	D	G	R	L	Q	L	D
Template Known Secondary structure														S					S	S	T	T	T	T												T	T		T	T		S			S	S	B	T	T					B								T	T	T								B			T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.													.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	.	E	I	D	N	S	K	R	T	L	H	G	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M
Query Conservation																									.												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	Q	F	I	Q	R	E	Y	K	L	R	S	Y	T	L	N	A	V	S	A	H	F	L	G	E	Q	S	I	I	S	D	L	Q	N	G	D	S	E	T	R	R	R	L	A	V	Y	C	L	K	D	A	Y	L	P	L	R	L	M	E	K	L
Template Known Secondary structure													S																							T	S																										T
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions