Job Description P03007 Confidence 99.67% Date Thu Jan 5 10:57:50 GMT 2012 Rank 21 Aligned Residues 171 % Identity 16% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Query Sequence		R	Q	I	V	L	D	T	E	T	T	G	M	N	Q	I	G	A	H	Y	E	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	I	E	I	G	A	V	E	V	V	N	R	R	L	T	G	N	N	.	.	.	.	.	F	H	V	Y	L	K	P	D	R	L	.	V	D	P	E	A	F	G
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Template Conservation
Template Sequence		P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S	D	E	E	G	N	A	P	V	E	A	C	T	W	Q	F	N	F	T	F	N	L	Q	D	D	M	Y	A	P	E	S	I	E
Template Known Secondary structure																			S			S	S	S															S												T	T	S				T	T		S						B				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		65				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.
Predicted Secondary structure			.	.	.																										.	.	.	.	.																																			.	.	.	.	.	.	.
Query SS confidence			.	.	.																										.	.	.	.	.																																			.	.	.	.	.	.	.
Query Sequence		V	.	.	.	H	G	I	A	D	E	F	L	L	D	K	P	T	F	A	E	V	A	D	E	F	M	D	Y	I	.	.	.	.	.	R	G	A	E	L	V	I	H	N	A	A	F	D	I	G	F	M	D	Y	E	F	S	L	L	K	R	D	I	P	K	T	N	T	F	.	.	.	.	.	.	.	C	K	V	T	D
Query Conservation			.	.	.																										.	.	.	.	.																																			.	.	.	.	.	.	.
Alig confidence			.	.	.																										.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	A	D	F	A	E	L	L	I	G	S	G	L	V	L	Q	E	E	V	T	W	I	T	F	H	S	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L	P	A	E	Y	E	E	F	Y	K	I	L	C	I	Y	F	P	K	N	Y	D
Template Known Secondary structure						T	T											B											T	T	T	S	S	S		T	T						S	S															S				S	S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	V	A	R	K	M	F	P	G	K	R	N	S	L	D	A	L	C	A	R	Y	E	I	D	N	S	K	R	T	L	H	G	A	L	L	D	A	Q	I	L	A	E	V	Y	L	A	M	T
Query Conservation
Alig confidence										.																						.
Template Conservation										.																						.
Template Sequence		I	K	Y	I	M	K	S	V	.	L	N	N	S	K	G	L	Q	D	I	A	D	D	L	Q	I	H	R	I	G	P	.	Q	H	Q	A	G	S	D	A	L	L	T	A	R	I	F	F	E	I	R
Template Known Secondary structure							T	T	T	.	T													T	T					S		.	T	T	S
Template Predicted Secondary structure										.																						.
Template SS confidence
		205	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions